Parental gene: | UBE2L3, ENSCJAG00000015818 |
| Aliases: | None |
| Description: | ubiquitin-conjugating enzyme E2L 3 [Source:HGNC Symbol;Acc:12488] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 1:185509453..185569418(+) |
>ENSCJAG00000015818
ATGGCGGCCAGCAGGAGGCTGATGAAGGAGCTTGAAGAAATCCGCAAATGTGGAATGAAAAACTTCCGTAACATCCAGGT
TGATGAAGCTAATTTATTGACTTGGCAAGGGCTTATTGTTCCTGACAACCCTCCGTATGATAAGGGGGCCTTCAGAATCG
AAATCAACTTTCCAGCAGAGTACCCATTCAAACCACCGAAGATCACATTTAAAACAAAGATCTATCACCCGAACATCGAT
GAAAAGGGGCAGGTCTGTCTCCCAGTAATTAGTGCTGAAAACTGGAAGCCAGCAACCAAAACCGACCAAGTAATCCAGTC
CCTCATAGCACTGGTGAATGACCCCCAGCCCGAGCACCCACTTCGGGCTGACCTAGCTGAAGAATACTCTAAGGACCGTA
AAAAATTCTGTAAGAATGCTGAAGAGTTTACAAAGAAATATGGGGAAAAGCGACCTGTGGACTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_colon | 20 .01 RPM |
| SRP051959_heart | 16 .33 RPM |
| SRP051959_kidney | 20 .39 RPM |
| SRP051959_liver | 13 .60 RPM |
| SRP051959_lung | 20 .53 RPM |
| SRP051959_lymph_node | 22 .17 RPM |
| SRP051959_skeletal_muscle | 14 .52 RPM |
| SRP051959_spleen | 22 .92 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000015284 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000007875 | within_species_paralog | 4 retrogenes | |
| Callithrix jacchus | ENSCJAG00000011559 | other_paralog | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000015492 | within_species_paralog | 3 retrogenes | |
| Dipodomys ordii | ENSDORG00000011406 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000019274 | possible_ortholog | 1 retrogene | |
| Felis catus | ENSFCAG00000008008 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000028073 | ortholog_one2one | 3 retrogenes | |
| Myotis lucifugus | ENSMLUG00000001547 | possible_ortholog | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000017665 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000038965 | ortholog_one2one | 10 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000000192 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000011602 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000014114 | ortholog_one2one | 1 retrogene | |
| Tetraodon nigroviridis | ENSTNIG00000010600 | ortholog_one2many | 1 retrogene | |
| Takifugu rubripes | ENSTRUG00000003392 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1813 | 98.71 | 100.00 | Please wait, loading  |
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| 2. | retro_cjac_1815 | 99.19 | 79.87 | Please wait, loading |
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| 3. | retro_cjac_1998 | 81.65 | 100.00 | Please wait, loading |
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| 4. | retro_cjac_2073 | 99.35 | 100.00 | Please wait, loading |
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| 5. | retro_cjac_2511 | 96.10 | 100.00 | Please wait, loading |
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| 6. | retro_cjac_2576 | 93.51 | 100.00 | Please wait, loading |
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| 7. | retro_cjac_2856 | 99.35 | 100.00 | Please wait, loading |
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| 8. | retro_cjac_3174 | 74.68 | 98.70 | Please wait, loading |
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| 9. | retro_cjac_3296 | 100.00 | 100.00 | Please wait, loading |
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Download FASTA sequences of all ENSCJAG00000015818 retrocopies