RetrogeneDB ID: | retro_fcat_369 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:19133581..19134042(-) | ||
Located in intron of: | ENSFCAG00000007019 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2L3 | ||
Ensembl ID: | ENSFCAG00000008008 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2L 3 [Source:HGNC Symbol;Acc:12488] |
Percent Identity: | 91.61 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITF |
MAA.RRLMKELEEIRKCGMK.FRNIQVDEANLLTWQGLIVPDNPPYDKG.FRI.INFPAEYPFKPPKI.F | |
Retrocopy | MAAGRRLMKELEEIRKCGMKSFRNIQVDEANLLTWQGLIVPDNPPYDKGVFRIKINFPAEYPFKPPKIIF |
Parental | KTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEH-PLRADLAEEYSKDRKKFCKN |
KTKIYHPNI.EKGQVCLPVISAENWKPATKTDQVIQSL.ALVNDPQP...PLRADLAEEYSKDRKKFCKN | |
Retrocopy | KTKIYHPNINEKGQVCLPVISAENWKPATKTDQVIQSLRALVNDPQPMY<PLRADLAEEYSKDRKKFCKN |
Parental | AEEFTKKYGEKRPVD |
.E.FT.KYGEKRPVD | |
Retrocopy | TEDFTNKYGEKRPVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 17 .56 RPM |
SRP017611_kidney | 0 .10 RPM | 20 .41 RPM |
SRP017611_liver | 0 .10 RPM | 14 .35 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000015284 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000015818 | 9 retrocopies | |
Cavia porcellus | ENSCPOG00000006044 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000011406 | 1 retrocopy | |
Equus caballus | ENSECAG00000019274 | 1 retrocopy | |
Felis catus | ENSFCAG00000007748 | 2 retrocopies | |
Felis catus | ENSFCAG00000008008 | 1 retrocopy |
retro_fcat_369 ,
|
Felis catus | ENSFCAG00000024719 | 1 retrocopy | |
Felis catus | ENSFCAG00000024918 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000028073 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000001547 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017665 | 2 retrocopies | |
Mus musculus | ENSMUSG00000038965 | 10 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000192 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000011602 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000014114 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000001862 | 4 retrocopies | |
Tetraodon nigroviridis | ENSTNIG00000010600 | 1 retrocopy | |
Takifugu rubripes | ENSTRUG00000003392 | 1 retrocopy |