Parental gene: | HSBP1, ENSCJAG00000000641 |
| Aliases: | None |
| Description: | heat shock factor binding protein 1 [Source:HGNC Symbol;Acc:5203] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 20:38072704..38077542(+) |
>ENSCJAG00000000641
ATGGCCGAGACTGACCCCAAGACCGTGCAGGACCTCACCTCGGTGGTGCAGACACTGCTGCAGCAGATGCAAGATAAATT
TCAGACCATGTCTGACCAGATCATTGGGAGAATCGATGATATGAGTAGTCGCATTGATGATCTGGAGAAGAACATCGCAG
ACCTCATGACACAGGCTGGGGTGGAAGAGCTGGAAGGTGAAAACAAGATACCTGCCACACAAAAGAGCTGA
ATGGCCGAGACTGACCCCAAGACCGTGCAGGACCTCACCTCGGTGGTGCAGACACTGCTGCAGCAGATGCAAGATAAATT
TCAGACCATGTCTGACCAGATCATTGGGAGAATCGATGATATGAGTAGTCGCATTGATGATCTGGAGAAGAACATCGCAG
ACCTCATGACACAGGCTGGGGTGGAAGAGCTGGAAGGTGAAAACAAGATACCTGCCACACAAAAGAGCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 36 .37 RPM |
| SRP051959_skeletal_muscle | 29 .07 RPM |
| SRP051959_lymph_node | 22 .69 RPM |
| SRP051959_lung | 25 .59 RPM |
| SRP051959_liver | 58 .12 RPM |
| SRP051959_kidney | 68 .07 RPM |
| SRP051959_heart | 25 .73 RPM |
| SRP051959_colon | 21 .26 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000006485 | ortholog_one2one | 3 retrogenes | |
| Canis familiaris | ENSCAFG00000019973 | ortholog_one2one | 4 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000015303 | ortholog_one2one | 3 retrogenes | |
| Equus caballus | ENSECAG00000026920 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000230989 | ortholog_one2one | 2 retrogenes | |
| Latimeria chalumnae | ENSLACG00000022519 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000014112 | possible_ortholog | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000011483 | ortholog_one2many | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000007636 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000020115 | ortholog_one2one | 4 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000026776 | ortholog_one2one | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000015437 | ortholog_one2one | 7 retrogenes | |
| Ochotona princeps | ENSOPRG00000005658 | ortholog_one2one | 1 retrogene | |
| Procavia capensis | ENSPCAG00000004899 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000008401 | ortholog_one2one | 3 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000006994 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000006478 | ortholog_one2many | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000006648 | ortholog_one2one | 7 retrogenes | |
| Tursiops truncatus | ENSTTRG00000008666 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_708 | 82.67 | 98.68 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_762 | 97.37 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_1824 | 70.27 | 94.74 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_2156 | 76.00 | 98.68 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_3997 | 80.26 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000000641 retrocopies