RetrogeneDB ID:

retro_lafr_108

Retrocopy
location
Organism:Elephant (Loxodonta africana)
Coordinates:scaffold_1:22389115..22389346(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSLAFG00000029565
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSLAFG00000014112
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_lafr_108
ATGGCAGAGACTGACCCCAAGATCATGACGGATTTCACCTCAGTGGTCCAGACACTGCTGCAACAAATGCAAGATAAATT
TCAGACTATGTCTGACCAGATCATTGGAAGAATTGCTGACGTGAGTAGTTGCGTTGATGATCTAGAGAAAAATATTACAG
ACTTCATGACCCAGCTGGGGCGGGAAGAACTGGAAGGTGAAGACAAGATCCCTGCCACACAAAAGAGTTGA

ORF - retro_lafr_108 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.21 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAETDPKNMQDLTSVVQTLLQQMQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVEELEGENKI
MAETDPK.M.D.TSVVQTLLQQMQDKFQTMSDQIIGRI.D.SS..DDLEKNI.D.MTQ.G.EELEGE.KI
RetrocopyMAETDPKIMTDFTSVVQTLLQQMQDKFQTMSDQIIGRIADVSSCVDDLEKNITDFMTQLGREELEGEDKI
ParentalPATQKS
PATQKS
RetrocopyPATQKS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Loxodonta africana was not studied using RNA-Seq expression data.
Loxodonta africana was not studied using ChIP-Seq data.
Loxodonta africana was not studied using EST data.
Loxodonta africana was not studied using FANTOM5 data.
retro_lafr_108 was not experimentally validated.

Retrocopy orthology:
Loxodonta africana does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 20 parental genes, and 56 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000064853 retrocopies
Canis familiaris ENSCAFG000000199734 retrocopies
Callithrix jacchus ENSCJAG000000006415 retrocopies
Dasypus novemcinctus ENSDNOG000000153033 retrocopies
Equus caballus ENSECAG000000269201 retrocopy
Homo sapiens ENSG000002309892 retrocopies
Latimeria chalumnae ENSLACG000000225191 retrocopy
Loxodonta africana ENSLAFG00000014112 2 retrocopies
retro_lafr_108 , retro_lafr_15,
Macropus eugenii ENSMEUG000000114832 retrocopies
Myotis lucifugus ENSMLUG000000076361 retrocopy
Macaca mulatta ENSMMUG000000201154 retrocopies
Nomascus leucogenys ENSNLEG000000267763 retrocopies
Otolemur garnettii ENSOGAG000000154377 retrocopies
Ochotona princeps ENSOPRG000000056581 retrocopy
Procavia capensis ENSPCAG000000048992 retrocopies
Pan troglodytes ENSPTRG000000084013 retrocopies
Pteropus vampyrus ENSPVAG000000069941 retrocopy
Tupaia belangeri ENSTBEG000000064781 retrocopy
Tarsius syrichta ENSTSYG000000066487 retrocopies
Tursiops truncatus ENSTTRG000000086663 retrocopies



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