Parental gene:

TMEM248, ENSCJAG00000004278

Aliases:TMEM248, C2H7orf42
Description:transmembrane protein 248 [Source:HGNC Symbol;Acc:25476]
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:1594456..1630938(+)


>ENSCJAG00000004278
ATGTTTAGCATCAACCCCCTGGAGAACCTGAAGGTATACATCAGCAGTCGGCCTCCCCTGGTGGTCTTCATGATCAGCGT
GAGCGCCATGGCCATAGCTTTCCTGACCCTGGGCTATTTCTTCAAAATCAAGGAGATTAAATCACCAGAAATGGCGGAGG
ATTGGAATACTTTTCTGCTACGGTTCAATGATTTGGACTTGTGTGTATCAGAGAATGAAACGCTAAAGCATCTCACAAAC
GACTCCACAACTCCGGAAAGCACCATGACCAGCGGGCAGGCCCGAGCTTCCACCCAGTCGCCCCAGGCCCTGGAGGACTC
AGGCCCGGTGAACATCTCAGTCGCAATCACCCTCACCTTGGACCCACTGAAACCCTTCGGAGGGTATTCCCGGAACGTCA
CCCATCTGTACTCAACAATCTTAGGGCATCAGATTGGACTTTCAGGCAGGGAAGCCCACGAGGAGATAAACATCACCTTC
ACCCTGCCTACAGCTTGGAGCTCAGACGACTGTGCCCTCCACGGTCACTGTGAGCAGGTGGTATTTACAGCCTGCATGAC
CCTCACAGCCAGCCCTGGGGTGTTCCCCGTCACTGTACAGCCACCACACTGTGTTCCCGACACGTACAGCAACGCCACGC
TCTGGTACAAGATCTTCACAACTGCCCGAGATGCCAACACAAAATACGCTCAAGATTACAATCCTTTCTGGTGTTATAAG
GGGGCCATTGGAAAAGTCTATCATGCTTTAAATCCCAAGCTTACAGTGATTGTTCCAGATGATGACCGTTCATTAATTAA
TTTGCATCTCATGCACACCAGTTACTTCCTCTTTGTGATGGTGATAACGATGTTTTGCTATGCTGTTATCAAGGGCAGAC
CCAGCAAATTGCGTCAGAGCAATCCTGAATTTTGTCCTGAGAAGGTGGCTTTGGCTGAAGCCTAA

Library Parental gene expression (RPM)
SRP051959_colon 16 .97 RPM
SRP051959_heart 18 .35 RPM
SRP051959_kidney 25 .69 RPM
SRP051959_liver 20 .90 RPM
SRP051959_lung 27 .96 RPM
SRP051959_lymph_node 19 .57 RPM
SRP051959_skeletal_muscle 15 .77 RPM
SRP051959_spleen 21 .41 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000000830 ortholog_one2one 1 retrogene
retro_cpor_330,
Echinops telfairi ENSETEG00000015971 ortholog_one2one 1 retrogene
retro_etel_2097,
Homo sapiens ENSG00000106609 ortholog_one2one 1 retrogene
retro_hsap_3093,
Gorilla gorilla ENSGGOG00000022776 ortholog_one2one 1 retrogene
retro_ggor_2124,
Myotis lucifugus ENSMLUG00000000616 ortholog_one2one 1 retrogene
retro_mluc_1974,
Macaca mulatta ENSMMUG00000015843 ortholog_one2one 1 retrogene
retro_mmul_1973,
Nomascus leucogenys ENSNLEG00000013326 ortholog_one2one 1 retrogene
retro_nleu_2235,
Pan troglodytes ENSPTRG00000019253 ortholog_one2one 1 retrogene
retro_ptro_2089,
Pteropus vampyrus ENSPVAG00000002978 ortholog_one2one 2 retrogenes
retro_pvam_988, retro_pvam_997,
Sorex araneus ENSSARG00000001884 ortholog_one2one 1 retrogene
retro_sara_563,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2145 67.15 64.97
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Download FASTA sequences of all ENSCJAG00000004278 retrocopies