Parental gene:

TMEM248, ENSG00000106609

Aliases:TMEM248, C7orf42
Description:transmembrane protein 248 [Source:HGNC Symbol;Acc:25476]
Organism:Human (Homo sapiens)
Coordinates:7:66386211..66423538(+)


>ENSG00000106609
ATGTTCAGCATCAACCCCCTGGAGAACCTGAAGGTGTACATCAGCAGTCGGCCTCCCCTGGTGGTCTTCATGATCAGCGT
AAGCGCCATGGCCATAGCTTTCCTGACCCTGGGCTACTTCTTCAAAATCAAGGAGATTAAATCCCCAGAAATGGCAGAGG
ATTGGAATACTTTTCTGCTACGGTTCAATGATTTGGACTTGTGTGTATCAGAGAATGAAACCCTCAAGCATCTCACAAAC
GACACCACAACTCCGGAAAGTACAATGACCAGCGGGCAGGCCCGAGCTTCCACCCAGTCCCCCCAGGCCCTGGAGGACTC
GGGCCCGGTGAATATCTCAGTCTCAATCACCCTAACCCTGGACCCACTGAAACCCTTCGGAGGGTATTCCCGCAACGTCA
CCCATCTGTACTCAACCATCTTAGGGCATCAGATTGGACTTTCAGGCAGGGAAGCCCACGAGGAGATAAACATCACCTTC
ACCCTGCCTACAGCGTGGAGCTCAGATGACTGCGCCCTCCACGGTCACTGTGAGCAGGTGGTATTCACAGCCTGCATGAC
CCTCACGGCCAGCCCTGGGGTGTTCCCCGTCACTGTACAGCCACCGCACTGTGTTCCTGACACGTACAGCAACGCCACGC
TCTGGTACAAGATCTTCACAACTGCCAGAGATGCCAACACAAAATACGCCCAAGATTACAATCCTTTCTGGTGTTATAAG
GGGGCCATTGGAAAAGTCTATCATGCTTTAAATCCCAAGCTTACAGTGATTGTTCCAGATGATGACCGTTCATTAATAAA
TTTGCATCTCATGCACACCAGTTACTTCCTCTTTGTGATGGTGATAACAATGTTTTGCTATGCTGTTATCAAGGGCAGAC
CTAGCAAATTGCGTCAGAGCAATCCTGAATTTTGTCCCGAGAAGGTGGCTTTGGCTGAAGCCTAA

Library Parental gene expression (RPM)
bodymap2_liver 91 .93 RPM
bodymap2_lung 140 .44 RPM
bodymap2_breast 134 .36 RPM
bodymap2_adipose 138 .73 RPM
bodymap2_adrenal 165 .58 RPM
bodymap2_skeletal_muscle 60 .02 RPM
bodymap2_thyroid 193 .85 RPM
bodymap2_prostate 154 .58 RPM
bodymap2_colon 118 .72 RPM
bodymap2_testis 195 .24 RPM
bodymap2_brain 100 .25 RPM
bodymap2_heart 61 .96 RPM
bodymap2_white_blood_cells 185 .85 RPM
bodymap2_lymph_node 153 .86 RPM
bodymap2_ovary 254 .71 RPM
bodymap2_kidney 110 .64 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000004278 ortholog_one2one 1 retrogene
retro_cjac_2145,
Cavia porcellus ENSCPOG00000000830 ortholog_one2one 1 retrogene
retro_cpor_330,
Echinops telfairi ENSETEG00000015971 ortholog_one2one 1 retrogene
retro_etel_2097,
Gorilla gorilla ENSGGOG00000022776 ortholog_one2one 1 retrogene
retro_ggor_2124,
Myotis lucifugus ENSMLUG00000000616 ortholog_one2one 1 retrogene
retro_mluc_1974,
Macaca mulatta ENSMMUG00000015843 ortholog_one2one 1 retrogene
retro_mmul_1973,
Nomascus leucogenys ENSNLEG00000013326 ortholog_one2one 1 retrogene
retro_nleu_2235,
Pan troglodytes ENSPTRG00000019253 ortholog_one2one 1 retrogene
retro_ptro_2089,
Pteropus vampyrus ENSPVAG00000002978 ortholog_one2one 2 retrogenes
retro_pvam_988, retro_pvam_997,
Sorex araneus ENSSARG00000001884 ortholog_one2one 1 retrogene
retro_sara_563,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_3093 77.27 70.06
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Download FASTA sequences of all ENSG00000106609 retrocopies