Parental gene:

MMU.14891, ENSMMUG00000015843

Aliases:TMEM248, C3H7orf42, C7orf42
Description:UPF0458 protein C7orf42 [Source:RefSeq peptide;Acc:NP_001180706]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:3:57912146..58125685(-)


>ENSMMUG00000015843
ATGTTCAGCATCAACCCCCTGGAGAACCTGAAGGTGTACATCAGCAGTCGGCCTCCCCTGGTGGTCTTCATGATCAGCGT
GAGTGCCATGGCCATAGCTTTTCTGACCCTGGGCTACTTCTTCAAAATCAAGGAGATTAAATCACCAGAAATGGCAGAGG
ATTGGAATACTTTTCTGCTACGGTTCAATGATTTGGACCTGTGTGTATCAGAGAATGAAACGCTAAAGCATCTCACAAAT
GACACCACAACTCCGGAAAGCACAATGACCAGCGGGCAGGCCCGAGCTTCCACCCAGTCCCCCCAGGCCCTGGAGGACTC
GGGCCCTGTGAATATCTCAGTCGCAATCACCCTAACCCTGGACCCACTGAAACCCTTCGGAGGGTATTCCCGCAACGTCA
CCCATCTGTACTCAACCATCTTAGGGCATCAGATTGGACTTTCAGGCAGGGAAGCCCACGAGGAGATAAACATCACCTTC
ACCCTGCCTACAGCGTGGAGCTCAGACGACTGCGCCCTCCACGGTCACTGTGAGCAGGTGGTGTTCACAGCCTGCATGAC
CCTCACGGCCAGCCCTGGGGTGTTCCCCGTCACTGTACAGCCACCACACTGTGTTCCTGACACATACAGCAACGCCACGC
TCTGGTACAAGATCTTCACAACTGCCAGAGATGCCAACACAAAATACGCGCAAGATTACAATCCTTTCTGGTGTTATAAG
GGGGCCATTGGAAAAGTCTATCATGCTTTAAATCCCAAGCTTACAGTGATTGTTCCAGATGATGACCGTTCATTAATAAA
TTTGCATCTCATGCACACCAGTTACTTCCTCTTTGTGATGGTGATAACGATGTTTTGCTATGCTGTTATCAAGGGCAGAC
CCAGCAAATTGCGTCAGAGCAATCCTGAATTTTGTCCCGAGAAGGTGGCTTTGGCTGAAGCCTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 44 .58 RPM
SRP007412_brain 40 .79 RPM
SRP007412_cerebellum 37 .20 RPM
SRP007412_heart 25 .44 RPM
SRP007412_kidney 46 .01 RPM
SRP007412_liver 49 .52 RPM
SRP007412_testis 26 .84 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000004278 ortholog_one2one 1 retrogene
retro_cjac_2145,
Cavia porcellus ENSCPOG00000000830 ortholog_one2one 1 retrogene
retro_cpor_330,
Echinops telfairi ENSETEG00000015971 ortholog_one2one 1 retrogene
retro_etel_2097,
Homo sapiens ENSG00000106609 ortholog_one2one 1 retrogene
retro_hsap_3093,
Gorilla gorilla ENSGGOG00000022776 ortholog_one2one 1 retrogene
retro_ggor_2124,
Myotis lucifugus ENSMLUG00000000616 ortholog_one2one 1 retrogene
retro_mluc_1974,
Nomascus leucogenys ENSNLEG00000013326 ortholog_one2one 1 retrogene
retro_nleu_2235,
Pan troglodytes ENSPTRG00000019253 ortholog_one2one 1 retrogene
retro_ptro_2089,
Pteropus vampyrus ENSPVAG00000002978 ortholog_one2one 2 retrogenes
retro_pvam_988, retro_pvam_997,
Sorex araneus ENSSARG00000001884 ortholog_one2one 1 retrogene
retro_sara_563,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1973 73.81 66.24
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Download FASTA sequences of all ENSMMUG00000015843 retrocopies