RetrogeneDB ID: | retro_sara_563 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_233938:5064..6005(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM248 | ||
Ensembl ID: | ENSSARG00000001884 | ||
Aliases: | None | ||
Description: | transmembrane protein 248 [Source:HGNC Symbol;Acc:25476] |
Percent Identity: | 97.14 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MFSINPLENLKLYISSRPPLVVFMISVSAMAIAFLTLGYFFKIKEIKSPEMAEDWNTFLLRFNDLDFCVS |
MFSINPLENLKLYISSRPPL.VFMISVSAMAIAFLTLGYFFKIKEIKSPEMAEDWNTFLLRFNDLDFC.S | |
Retrocopy | MFSINPLENLKLYISSRPPLMVFMISVSAMAIAFLTLGYFFKIKEIKSPEMAEDWNTFLLRFNDLDFCAS |
Parental | ENETLKHLTNDTTTPESTMTSGQTRVSTQSPQALEDSGPINISVAITLTLD-PLKPFGGYSRNVTHLYST |
.NETLKHLTNDTTTPESTMTSGQTRVSTQSPQALEDSGPINI.VAITLTLD.PLKPFGGYSRNVTHLYST | |
Retrocopy | QNETLKHLTNDTTTPESTMTSGQTRVSTQSPQALEDSGPINI*VAITLTLD<PLKPFGGYSRNVTHLYST |
Parental | ILGHQIGLSGREAHEEINITFTLPTAWSSDDCALHSHCEQVVFTACMTLTANPGVFPVTVQPPHCVPDTY |
ILGHQIGLSGREAHEEINITFTLPTAWSSDDCALHSHCEQVVFTACMTLTANPGVFPVTVQPPHCVPDTY | |
Retrocopy | ILGHQIGLSGREAHEEINITFTLPTAWSSDDCALHSHCEQVVFTACMTLTANPGVFPVTVQPPHCVPDTY |
Parental | SNATLWYKIFTTARDANTKYAQDYNPFWCYKGAIGKVYHALNPKLTVIVPDDDRSLINLHLMHTSYFLFV |
SNATLWYKIFTTARDANTKYAQDYNPFWCYK..IGKVYHALNPKLTVIVPDDDRSLINLHLMHTSYFLFV | |
Retrocopy | SNATLWYKIFTTARDANTKYAQDYNPFWCYKSTIGKVYHALNPKLTVIVPDDDRSLINLHLMHTSYFLFV |
Parental | MVITMFCYAVIKGRPSKLRQSNPEFCPEKVALADA |
MVITMFCYAVIKGRP.KLRQSNP.FCPEKVALADA | |
Retrocopy | MVITMFCYAVIKGRPRKLRQSNP*FCPEKVALADA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000004278 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000000830 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015971 | 1 retrocopy | |
Homo sapiens | ENSG00000106609 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000022776 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000000616 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015843 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013326 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000019253 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000002978 | 2 retrocopies | |
Sorex araneus | ENSSARG00000001884 | 1 retrocopy |
retro_sara_563 ,
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