RetrogeneDB ID: | retro_mluc_1974 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429971:2078857..2079371(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000023799 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C7ORF42 | ||
Ensembl ID: | ENSMLUG00000000616 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.29 % |
Parental protein coverage: | 55.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | NINPLENLKL-YISSRPPLVVFMISVSAMAIAFLTLGYFFKIKEIKSPGMAEDWNTFLLRFNDLDLCVSE |
.I.PLENL.L...SSRPPL.VF..SVSA.AIAFLTLGYFFKIK.IKSPG.AED.NTFLL.FNDLDLCVSE | |
Retrocopy | DIKPLENLTL<AFSSRPPLLVFITSVSALAIAFLTLGYFFKIK-IKSPGIAEDGNTFLLLFNDLDLCVSE |
Parental | NETLKHLTNDTTTPESTMTSGQAR-VSTQSPQALEDSGPVNISVAITLTLDPLKPFGGYSRNVTHLYSTI |
NETLKHLTNDT.TPE.T.TSGQA..VST.SPQAL.DSGPVNIS..ITLTL.PL.PFGGYS.NVTHLYSTI | |
Retrocopy | NETLKHLTNDTMTPEITVTSGQAK<VSTPSPQALGDSGPVNISGTITLTLFPLTPFGGYSCNVTHLYSTI |
Parental | LGHQIGLSGREAHEEINITFTLPAAWSADDCALHS |
LGHQIG.S.REAHEEIN.TFTLPAAW.ADDCAL.S | |
Retrocopy | LGHQIGHSRREAHEEINTTFTLPAAWHADDCALQS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000004278 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000000830 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015971 | 1 retrocopy | |
Homo sapiens | ENSG00000106609 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000022776 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000000616 | 1 retrocopy |
retro_mluc_1974 ,
|
Macaca mulatta | ENSMMUG00000015843 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013326 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000019253 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000002978 | 2 retrocopies | |
Sorex araneus | ENSSARG00000001884 | 1 retrocopy |