Parental gene: | CSDE1, ENSCPOG00000000538 |
| Aliases: | None |
| Description: | Cold shock domain-containing protein E1 [Source:UniProtKB/Swiss-Prot;Acc:P29174] |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_2:39158135..39159720(-) |
>ENSCPOG00000000538
TTTGGCTTCATTAACTATGAAGTAGGAGATAGCAAGAAGCTCTTTTTCCATGTGAAAGAAGTTCAGGATGGCATTGAGCT
ACAGGCAGGAGACGAGGTGGAGTTCTCAGTGATTCTTAACCAGCGCACTGGCAAGTGCAGTGCCTGTAATGTTTGGCGAG
TCTGCGAGGGCCCCAAGGCTGTTGCAGCCCCCCGACCTGATCGACTGGTCAATCGCTTGAAGAATATCACCCTGGATGAT
GCCAGTGCTCCTCGCCTAATGGTTCTTCGTCAGCCAAGGGGACCAGATAACTCAATGGGATTTGGTGCAGAAAGAAAGAT
ACGTCAGGCTGGTGTCATTGACTAA
TTTGGCTTCATTAACTATGAAGTAGGAGATAGCAAGAAGCTCTTTTTCCATGTGAAAGAAGTTCAGGATGGCATTGAGCT
ACAGGCAGGAGACGAGGTGGAGTTCTCAGTGATTCTTAACCAGCGCACTGGCAAGTGCAGTGCCTGTAATGTTTGGCGAG
TCTGCGAGGGCCCCAAGGCTGTTGCAGCCCCCCGACCTGATCGACTGGTCAATCGCTTGAAGAATATCACCCTGGATGAT
GCCAGTGCTCCTCGCCTAATGGTTCTTCGTCAGCCAAGGGGACCAGATAACTCAATGGGATTTGGTGCAGAAAGAAAGAT
ACGTCAGGCTGGTGTCATTGACTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 35 .78 RPM |
| SRP017611_kidney | 91 .18 RPM |
| SRP017611_brain | 50 .50 RPM |
| SRP040447_lung | 103 .66 RPM |
| SRP040447_skeletal_muscle | 181 .69 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000017129 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000005681 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000068823 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000030302 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_513 | 72.04 | 79.82 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_1402 | 80.70 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000000538 retrocopies