>retro_mluc_1011
ATGTTCTTCCACTATAGCGAAATTCTGGACGGGAACCAGCTCCATACTGCAGATGAAGTAAAGTTTACTGTGGTTCCTGA
TATGCTCTCTGCCCAAAGAAATCATGCTATTAGAATTTAAAAAAACTTCCCAAGGGCATGGTTTCATTCCATTTCCATTC
AAATCATCATTTTCTGGGCATTATAGAAAAAGAAGCCACTTTTTCCATTTCTAAAACCACTAGCCAAAATAAAGGCAAGG
AAACGGAGACTGAGGATGGTATTATTGCTTATGATGACTGTGGGGTGAAATTGACTATTTTTTTTCAAGCCAAGGATGTG
AACGGATCTACTTCTCCTCAAATAGGTGATAAGGTTGAATTTAGTATTAGTGACAAACAGAGGCCTGGACAGCAGACTGT
AACCTGTGTGCAACTTTTAGATCATAATTCTAACTCCAAGAGGCTCTTAGGTTATGTGGCAATTCTGAAGGATACTTTTG
GATTTATTGAAACAGCCAATCATGATTAGGACATATTTTTCCATTACAGTGAGTTCTCTGGTGATGCTGATAGCCTAGAA
CTGGGGGACATGGTCAAGTACAACTGGTCCAAAGGCAAAAGCAATAAAGTCAGTGCAGAAAAAGTCAACAAAACACACTT
GGTGAATGGCCTTACTGAAGAAGCAGATCCTACATCTACTCTGGTAAAGTCATTCGCCCCTTGAGAAGTGTTGATCCAAC
ACAGACTGAGTACCAAGGAATGATTGAGACTGTGGAGAAAGGGGATATGAAAGGTAAGGTCTATCCATCTGGCATAGTTG
GAATGGCCAACAAAGGAGATTGCCTGCAGATAGAGAAGAGTGTAAAATTCCATTTGTGTGTCCTAGGCCAAAATGCACAG
TCTATGGCTTACAACATCACCCTTCTGTGTAGGGCCACTGTGGAGTGTGTGAAAAATCAGTTTGGCTTCATTATTATGAA
GTAGGAGATAGCAAGAAGCTCTTTTTCCATGTGAAAGATGTTCAGGATGGCATTGAGCTACAGGCTAGAGATGAGGTGAT
TCTTAATCAGCACACTGGCAAGTGCAGTGTTTGTAATGTTTGGCGAGTCTGCAAGGGCCCCAAGGCTGTTGTAGCTTCAC
TACCTGATAGGTTGGTCAATCGCTTGAGGAACATCACCCTGGATAATGCCAGTGCTCCTGGCTAATGGTTCTTCCTCAGC
CAAAGGGACCAGATAACTCAATGGGACTTGGTGTAGAACGAAAGAACTGTCCGGCTGTTGTCATTGAC
ORF - retro_mluc_1011 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
82.41 % |
Parental protein coverage: |
52.52 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
4 |
Retrocopy - Parental Gene Alignment:
Parental | MFFHYSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRI-KKLP-KGTVSFHSHSDHRFLGTVEKEATFS |
| MFFHYSEILDGNQLH.ADEV.FTVVPDMLSAQRNHAIRI.K..P.KG.VSFH.HS.H.FLG..EKEATFS |
Retrocopy | MFFHYSEILDGNQLHTADEVKFTVVPDMLSAQRNHAIRI*KNFP<KGMVSFHFHSNHHFLGIIEKEATFS |
|
Parental | NPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVDGSTSPQIGDKVEFSISDKQRPGQQIATCVRL |
| ..KTTS.NKGKE.E.EDGIIAYDDCGVKLT...QAKDV.GSTSPQIGDKVEFSISDKQRPGQQ..TCV.L |
Retrocopy | ISKTTSQNKGKETETEDGIIAYDDCGVKLTXXXQAKDVNGSTSPQIGDKVEFSISDKQRPGQQTVTCVQL |
|
Parental | LGRNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKV |
| L..NSNSKRLLGYVA.LKD.FGFIETANHD..IFFHYSEFSGD.DSLELGDMV.Y..SKGK.NKVSAEKV |
Retrocopy | LDHNSNSKRLLGYVAILKDTFGFIETANHD*DIFFHYSEFSGDADSLELGDMVKYNWSKGKSNKVSAEKV |
|
Parental | NKTHSVNGITEEADPT-IYSGKVIRPLRSVDPTQTEYQGMIEIMEEGDMKGEVYPFGIVGMANKGDCLQK |
| NKTH.VNG.TEEADPT.IYSGKVIRPLRSVDPTQTEYQGMIE..E.GDMKG.VYP.GIVGMANKGDCLQ. |
Retrocopy | NKTHLVNGLTEEADPT<IYSGKVIRPLRSVDPTQTEYQGMIETVEKGDMKGKVYPSGIVGMANKGDCLQI |
|
Parental | GESVKFQLCVLGQNAQTMAYNITPLRRATVECVKDQFGFI-NYEVGDSKKLFFHVKEVQDGIELQAGDEV |
| ..SVKF.LCVLGQNAQ.MAYNIT.L.RATVECVK.QFGFI..YEVGDSKKLFFHVK.VQDGIELQA.DEV |
Retrocopy | EKSVKFHLCVLGQNAQSMAYNITLLCRATVECVKNQFGFI<YYEVGDSKKLFFHVKDVQDGIELQARDEV |
|
Parental | EFSVILNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPR-LMVLRQPRGPDNSMGFG |
| ....ILNQ.TGKCS.CNVWRVC.GPKAV.A..PDRLVNRL.NITLD.ASAP..LMVL.QP.GPDNSMG.G |
Retrocopy | ----ILNQHTGKCSVCNVWRVCKGPKAVVASLPDRLVNRLRNITLDNASAPG<LMVLPQPKGPDNSMGLG |
|
Parental | VERKIRQAGVID |
| VERK...A.VID |
Retrocopy | VERKNCPAVVID |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_1011 was not experimentally validated.
Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
5 parental genes, and
6 retrocopies.