>retro_mmus_1757
TCCCTACATCCTGGAGATGACGTGGAACTCACAATCAAGTACAGAAATGCTAAAGAAGTTGCAACAGATGTCAGACTATT
GCCTCAAGGAACAGTCATTTTTGAAGATATCAGCACTGAACATTTTGAAGGAACTATAACCAAAGATATCCCAAAAGTAC
CCAGTAAAAACCAGAATGACCCATAGCTAGGATGAATCAAAGTTGACTTTGTGAGTCCTAAAGAACTTCCCTTTGGAGAC
AAAGACACAAAATCCAAAGTGAACCTGCTGGAAGGTGACCATGTTAGCTTTAATATTTCAACAGACCGACGTGACAAATT
AGATCGAGCAACCAACATAGAGGTTCTATCAAATCCATTTCAGTTCACTAATGAAGCCAGAGAGATGGGTGTGATTGCTG
CTGTGAGAGATGGTTTTGGTTTCATCAAGTGTGTGGATCGTGATGCTCGTATGTTCTTCCACTTCAGTGACATTCTAGAC
GGGAACCAGCTCCACACTGCAGATGAAGCAGAGTTCACTGTGGTTCCTGTTATGCTCTCTGCCCAAAGAAATCATGCTGT
TAGGATTAAGAAACTTCCCAAGGGCACGGTTTTAGTCCCTTCCCATTCAGATTGTCGTTTTCTGGGCACCATAGAAAAAG
AAGCCACTTTTTTAAATCCTAAAACTACAAGCCCAAATAAAGACAAAGACAAGGAGGCAGAAGATGGCATTACAGCTTAT
GATGACTGTGGTGTGAAACTGACAATTGCTTTTCAAGCCAAGGATGTGGAAGGATCTATTTCTCCTCAGATAGGAGAGAA
GGTTGATTTTAGGATTAGTGACAAACAGAGGCCTGGACAGATTGCAACTTTTGTGAGACTTGTAGGTCATAATTCTACCT
CCAAAAGGCTCTCGAGTTATGTGGCAACTCTGAAAGATAATTTTGGATTTATAGAAACAGCTAATCATGATAAGGAAATA
TTTTTCATTAGAGTGAGTTCTCTGGTGATGTTGATAGCCTGGAACTGGGAGACATGGTTGAATACAGCTTGTCCAAAGGC
AAAGGCAATAATGTCAGTGCTGAGAAAGTAAACAAACCTCACTCAGTAAATGGCATTACTGAGGAAGCTAATCCCACCAT
CTACTCTGGTAAAGTCATTCGCCCTCTGAGAGGTGTTGATCCAACACAGATTGAGTACCAAGGACTGACTGAGACTGTGA
AGGAGGGGGATATGAAAGGTGAAGTGTATCCTTTTGGCACAGTTGGGATGGCCAACAAAGGGGATTGCCTACAGAAAGGG
GAGAGTGTCAAGTTCCAGTTGTGTGTACTTGGCCAAAATGCACAAACTATGGCCTACAACATCACACCCCTTCGTAGGGC
TACTGTGGAGTGTGTGAAAGATCAGTTTGGCTTTATTAACTATGAAATAAGAGATAGCAAGAAGCTCTTTTTCCATGTGA
AAGAAGTTCAGGATGGCGTTGAGCTACAGGCAGGAGATGAGGTGGAATTCTCAGTGATC
ORF - retro_mmus_1757 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
89.64 % |
Parental protein coverage: |
62.78 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | TLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKNQNDPLPGRIKVDF |
| .L.PGDDVE.TIK.RN.KEVATDVRLLPQGTVIFEDIS.EHFEGT.TK.IPKVPSKNQNDP..G.IKVDF |
Retrocopy | SLHPGDDVELTIKYRNAKEVATDVRLLPQGTVIFEDISTEHFEGTITKDIPKVPSKNQNDP*LG*IKVDF |
|
Parental | VIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGFG |
| V.PKELPFGDKDTKSKV.LLEGDHV.FNISTDRRDKL.RATNIEVLSN.FQFTNEAREMGVIAA.RDGFG |
Retrocopy | VSPKELPFGDKDTKSKVNLLEGDHVSFNISTDRRDKLDRATNIEVLSNPFQFTNEAREMGVIAAVRDGFG |
|
Parental | FIKCVDRDARMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSFHSHSDHRFLGT |
| FIKCVDRDARMFFHFS.ILDGNQLH.ADE.EFTVVP.MLSAQRNHA.RIKKLPKGTV...SHSD.RFLGT |
Retrocopy | FIKCVDRDARMFFHFSDILDGNQLHTADEAEFTVVPVMLSAQRNHAVRIKKLPKGTVLVPSHSDCRFLGT |
|
Parental | VEKEATFSNPKTTSPNKGKDKEAEDGIIAYDDCGVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQ |
| .EKEATF.NPKTTSPNK.KDKEAEDGI.AYDDCGVKLTIAFQAKDVEGS.SPQIG.KV.F.ISDKQRPG. |
Retrocopy | IEKEATFLNPKTTSPNKDKDKEAEDGITAYDDCGVKLTIAFQAKDVEGSISPQIGEKVDFRISDKQRPG- |
|
Parental | QIATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDKEIF-FHYSEFSGDVDSLELGDMVEYSLSKGK |
| QIAT.VRL.G.NS.SKRL..YVATLKDNFGFIETANHDKEIF.FH.SEFSGDVDSLELGDMVEYSLSKGK |
Retrocopy | QIATFVRLVGHNSTSKRLSSYVATLKDNFGFIETANHDKEIF<FH*SEFSGDVDSLELGDMVEYSLSKGK |
|
Parental | GNKVSAEKVNKAHSVNGITEEANPTIYSGKVIRPLRGVDPTQIEYQGMIEIVEEGDMKGEVYPFGIVGMA |
| GN.VSAEKVNK.HSVNGITEEANPTIYSGKVIRPLRGVDPTQIEYQG..E.V.EGDMKGEVYPFG.VGMA |
Retrocopy | GNNVSAEKVNKPHSVNGITEEANPTIYSGKVIRPLRGVDPTQIEYQGLTETVKEGDMKGEVYPFGTVGMA |
|
Parental | NKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGVE |
| NKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVKDQFGFINYE..DSKKLFFHVKEVQDGVE |
Retrocopy | NKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVKDQFGFINYEIRDSKKLFFHVKEVQDGVE |
|
Parental | LQAGDEVEFSVI |
| LQAGDEVEFSVI |
Retrocopy | LQAGDEVEFSVI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .02 RPM |
218 .63 RPM |
SRP007412_cerebellum |
0 .09 RPM |
220 .62 RPM |
SRP007412_heart |
0 .28 RPM |
590 .32 RPM |
SRP007412_kidney |
0 .29 RPM |
378 .16 RPM |
SRP007412_liver |
0 .11 RPM |
228 .52 RPM |
SRP007412_testis |
0 .37 RPM |
556 .05 RPM |
RNA Polymerase II actvity near the 5' end of retro_mmus_1757 was not detected
No EST(s) were mapped for retro_mmus_1757 retrocopy.
No TSS is located nearby retro_mmus_1757 retrocopy 5' end.
retro_mmus_1757 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmus_1757 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
6 retrocopies.