RetrogeneDB ID: | retro_cpor_513 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_18:2081281..2081552(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CSDE1 | ||
Ensembl ID: | ENSCPOG00000000538 | ||
Aliases: | None | ||
Description: | Cold shock domain-containing protein E1 [Source:UniProtKB/Swiss-Prot;Acc:P29174] |
Percent Identity: | 72.04 % |
Parental protein coverage: | 79.82 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | GIELQAGDEVEFSVILNQRTG-KCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQP |
G.EL.AGD.VEFSVIL.QRT..KC.ACNVW.V.EG.KA.AAPR.DRLV..LKN.TLDDA.AP...VL.QP | |
Retrocopy | GQELHAGDKVEFSVILHQRTA<KCNACNVWWVFEGLKAAAAPRVDRLVSHLKNMTLDDAHAPHIVVLSQP |
Parental | R-GPDNSMGFGAERKIRQAGVID |
R.GP..SMGFGA.RKIRQ.GV.D | |
Retrocopy | R<GPNYSMGFGAGRKIRQGGVTD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 50 .50 RPM |
SRP017611_kidney | 0 .00 RPM | 91 .18 RPM |
SRP017611_liver | 0 .00 RPM | 35 .78 RPM |
SRP040447_lung | 0 .00 RPM | 103 .66 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 181 .69 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017129 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000000538 | 2 retrocopies |
retro_cpor_1402, retro_cpor_513 ,
|
Myotis lucifugus | ENSMLUG00000005681 | 1 retrocopy | |
Mus musculus | ENSMUSG00000068823 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000030302 | 1 retrocopy |