Parental gene:

DNAJC15, ENSCPOG00000003485

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_6:53385866..53449853(+)


>ENSCPOG00000003485
ATGGCTGCTCGCGGCGCCGTGACCTCTGCCGGCGAGGCGCTGCGTTACGCAGAATACTCGCCACCGTCGGCCAAACAGCC
CGACGCCGATATTGACCACGGGCTGGCAAGAAATTTAATAGCTGTAGGACTGGGAGTTGCAGCTCTTGGATTTGCAGGTC
GTTATGCATTTCAGATCTGGAAACCTCTAGAACAAATAATCACAGAAACTGCAAGGAAGATTTCATCTCCTAACCTTTCA
TCCTATTATAAAGGAGGATTTGAACAGAAAATGAGTCGGCGAGAAGCTAGTCTTATTTTAGGTGTAAGCCCATCTGCTGG
CAAAGCCAAGATTAGAACAGCTCACAAAAAAATCATGATTCTGAATCACCCAGATAAAGGTGGATCTCCTTATCTAGCAG
CCAAAATAAATGAAGCAAAAGACTTGCTAGAATCAACTACCAAACAC

Library Parental gene expression (RPM)
SRP017611_liver 10 .23 RPM
SRP017611_kidney 7 .12 RPM
SRP017611_brain 8 .22 RPM
SRP040447_lung 5 .40 RPM
SRP040447_skeletal_muscle 4 .31 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000034785 ortholog_one2one 1 retrogene
retro_btau_1624,
Canis familiaris ENSCAFG00000004664 ortholog_one2one 1 retrogene
retro_cfam_939,
Callithrix jacchus ENSCJAG00000017589 ortholog_one2one 2 retrogenes
retro_cjac_1663, retro_cjac_634,
Cavia porcellus ENSCPOG00000021198 within_species_paralog 1 retrogene
retro_cpor_126,
Equus caballus ENSECAG00000007757 ortholog_one2one 1 retrogene
retro_ecab_561,
Erinaceus europaeus ENSEEUG00000008785 ortholog_one2one 5 retrogenes
retro_eeur_360, retro_eeur_608, retro_eeur_64, retro_eeur_93, retro_eeur_95,
Felis catus ENSFCAG00000022632 ortholog_one2one 1 retrogene
retro_fcat_259,
Homo sapiens ENSG00000120675 ortholog_one2one 2 retrogenes
retro_hsap_3331, retro_hsap_4312,
Gorilla gorilla ENSGGOG00000016338 ortholog_one2one 2 retrogenes
retro_ggor_1294, retro_ggor_2882,
Loxodonta africana ENSLAFG00000004343 ortholog_one2one 2 retrogenes
retro_lafr_287, retro_lafr_942,
Myotis lucifugus ENSMLUG00000008684 ortholog_one2one 3 retrogenes
retro_mluc_1358, retro_mluc_1544, retro_mluc_520,
Macaca mulatta ENSMMUG00000013689 ortholog_one2one 1 retrogene
retro_mmul_1169,
Mustela putorius furo ENSMPUG00000001704 ortholog_one2one 1 retrogene
retro_mputfur_1065,
Nomascus leucogenys ENSNLEG00000001759 ortholog_one2one 4 retrogenes
retro_nleu_1408, retro_nleu_1464, retro_nleu_1675, retro_nleu_585,
Oryctolagus cuniculus ENSOCUG00000001696 ortholog_one2one 4 retrogenes
retro_ocun_1101, retro_ocun_487, retro_ocun_882, retro_ocun_936,
Ochotona princeps ENSOPRG00000016191 ortholog_one2one 5 retrogenes
retro_opri_1038, retro_opri_235, retro_opri_285, retro_opri_756, retro_opri_766,
Pongo abelii ENSPPYG00000005323 ortholog_one2one 1 retrogene
retro_pabe_3508,
Pan troglodytes ENSPTRG00000005831 ortholog_one2one 2 retrogenes
retro_ptro_2148, retro_ptro_2920,
Pteropus vampyrus ENSPVAG00000011281 ortholog_one2one 1 retrogene
retro_pvam_807,
Sorex araneus ENSSARG00000007683 ortholog_one2one 1 retrogene
retro_sara_658,
Ictidomys tridecemlineatus ENSSTOG00000012805 ortholog_one2one 1 retrogene
retro_itri_1710,
Taeniopygia guttata ENSTGUG00000012364 ortholog_one2one 2 retrogenes
retro_tgut_20, retro_tgut_45,
Tursiops truncatus ENSTTRG00000015580 ortholog_one2one 1 retrogene
retro_ttru_1021,
Vicugna pacos ENSVPAG00000001445 ortholog_one2one 1 retrogene
retro_vpac_113,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_327 53.16 52.35
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Download FASTA sequences of all ENSCPOG00000003485 retrocopies