Parental gene:

ATG12, ENSCPOG00000007187

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_17:29395230..29404781(-)


>ENSCPOG00000007187
CTACTCTCAAGGCTCTCTTGCGACATTCCCCAGCGCAAAGCCCGCCCACTGCACGCGCTCTGCCTCCACTTCCGGCTTGG
CGCCGCTCCCGGGAAGATGGCGGAGGATCCCGAGTCCGTGCTGCAGCTCCCTCCCTCGGCTGTGGCTGCTGGCGGCGAGG
GTCTTGGGGAACTGTCTCCCGAAACAGCCACACCAGAGCCCCCTTCTGCTGCAGTTTCGCCGGGGACGGAAGAACCTGCC
GGCGACACCAAGAAAAAAATTGATGTCCTGCTAAAGGCTGTGGGAGATACCCCTATAATGAAAACAAAGAAGTGGGCTGT
AGAACGAACCCGAACAATCCAAGGACTCATTGACTTCATCAAAAAGTTCCTTAAACTTGTGGCCTCTGAACAGTTGTTTA
TTTATGTGAATCAATCCTTTGCACCTTCCCCAGACCAGGAAGTTGGAACCCTTTATGAGTGCTTTGGTAGTGATGGTAAA
CTGGTCCTGCATTACTGCAAATCTCAGGCATGGGGG

Library Parental gene expression (RPM)
SRP017611_liver 19 .28 RPM
SRP017611_kidney 21 .77 RPM
SRP017611_brain 13 .57 RPM
SRP040447_lung 13 .67 RPM
SRP040447_skeletal_muscle 9 .60 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000004464 ortholog_one2one 1 retrogene
retro_chof_1745,
Equus caballus ENSECAG00000012452 ortholog_one2one 1 retrogene
retro_ecab_883,
Echinops telfairi ENSETEG00000018837 ortholog_one2one 1 retrogene
retro_etel_1721,
Homo sapiens ENSG00000145782 ortholog_one2one 1 retrogene
retro_hsap_1860,
Gorilla gorilla ENSGGOG00000016888 ortholog_one2one 2 retrogenes
retro_ggor_1814, retro_ggor_2150,
Loxodonta africana ENSLAFG00000015307 ortholog_one2one 1 retrogene
retro_lafr_450,
Myotis lucifugus ENSMLUG00000002759 ortholog_one2one 1 retrogene
retro_mluc_2259,
Pongo abelii ENSPPYG00000015699 ortholog_one2one 3 retrogenes
retro_pabe_1518, retro_pabe_1519, retro_pabe_2158,
Pan troglodytes ENSPTRG00000017154 ortholog_one2one 2 retrogenes
retro_ptro_1240, retro_ptro_1748,
Rattus norvegicus ENSRNOG00000000157 ortholog_one2one 1 retrogene
retro_rnor_2811,
Ictidomys tridecemlineatus ENSSTOG00000011755 ortholog_one2many 1 retrogene
retro_itri_156,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_865 68.22 60.47
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2. retro_cpor_944 53.62 77.33
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Download FASTA sequences of all ENSCPOG00000007187 retrocopies