Parental gene: | ATG12, ENSPPYG00000015699 |
| Aliases: | None |
| Description: | ubiquitin-like protein ATG12 [Source:RefSeq peptide;Acc:NP_001126258] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 5:116901529..116916382(-) |
>ENSPPYG00000015699
ATGACTAGCCGGGAACACCAAGTTTCACTGTGGAATTGCGTCCCCCTACTCCGGCGCCTCCTTTGCGACGCTCCCTGGAG
AAAAGCACGCCCACTGCACGCGCTCAGTCGCTACTTCCGCTCTCGGGTCTCTCCAAGCAAGATGGCGGAGGAGCCACAGA
CCGTGTTGCAGCTTCCTCCCTCGAGTGCTGCTGGAGGGGAAGGACTTACGGATGTCTCCCCAGAAACAACCACGCCGGAG
CCCCCGTCTTCCGCTGCAGTTTCCCCGGGAACAGAGGAACCTGCTGGCGACACCAAGAAAAAAATTGACATTTTGCTAAA
GGCTGTGGGTGATACTCCTATTATGAAAACAAAGAAGTGGGCAGTAGAGCGAACACGAACCATCCAAGGACTCATTGACT
TCATCAAAAAGTTTCTTAAACTTGTGGCCTCAGAACAGTTGTTTATTTATGTGAATCAGTCCTTTGCTCCTTCCCCAGAC
CAAGAAGTTGGAACTCTCTATGAGTGTTTTGGCAGTGATGGTAAACTGGTTTTACATTACTGCAAGTCTCAGGCATGGGG
ATGA
ATGACTAGCCGGGAACACCAAGTTTCACTGTGGAATTGCGTCCCCCTACTCCGGCGCCTCCTTTGCGACGCTCCCTGGAG
AAAAGCACGCCCACTGCACGCGCTCAGTCGCTACTTCCGCTCTCGGGTCTCTCCAAGCAAGATGGCGGAGGAGCCACAGA
CCGTGTTGCAGCTTCCTCCCTCGAGTGCTGCTGGAGGGGAAGGACTTACGGATGTCTCCCCAGAAACAACCACGCCGGAG
CCCCCGTCTTCCGCTGCAGTTTCCCCGGGAACAGAGGAACCTGCTGGCGACACCAAGAAAAAAATTGACATTTTGCTAAA
GGCTGTGGGTGATACTCCTATTATGAAAACAAAGAAGTGGGCAGTAGAGCGAACACGAACCATCCAAGGACTCATTGACT
TCATCAAAAAGTTTCTTAAACTTGTGGCCTCAGAACAGTTGTTTATTTATGTGAATCAGTCCTTTGCTCCTTCCCCAGAC
CAAGAAGTTGGAACTCTCTATGAGTGTTTTGGCAGTGATGGTAAACTGGTTTTACATTACTGCAAGTCTCAGGCATGGGG
ATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 31 .46 RPM |
| SRP007412_cerebellum | 34 .90 RPM |
| SRP007412_heart | 18 .00 RPM |
| SRP007412_kidney | 16 .97 RPM |
| SRP007412_liver | 15 .67 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000004464 | ortholog_one2one | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000007187 | ortholog_one2one | 2 retrogenes | |
| Equus caballus | ENSECAG00000012452 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000018837 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000145782 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000016888 | ortholog_one2one | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000015307 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000002759 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000017154 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000000157 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000011755 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_1518 | 93.84 | 78.07 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_1519 | 93.84 | 78.07 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_2158 | 58.02 | 83.42 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000015699 retrocopies