Parental gene: | NDEL1, ENSCPOG00000012878 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_61:7493215..7530630(+) |
>ENSCPOG00000012878
ATGGATGGTGAAGATATACCAAATTTTTCAAGTTTAAAGGAAGAAAATGCTTATTGGAAGGAACTTTCCTTGAAGTATAA
GCAAAGCTTCCAGGAAGCTCGGGATGAGCTGGTTGAATTCCAGGAAGGAAGCAGAGAATTAGAAGCAGAGTTGGAGGCGC
AGTTAGAACAGGCAGAGCAAAGAAACAGAGACCTACAAGCCGATAACCAAAGACTGAAATACGAAGTGGAAGCATTAAAG
GAGAAACTAGAACATCAGTATGCACAGAGCTACAAGCAGGTTTCTGTATTAGAAGACGATTTAAGTCAGACTAGGGCCAT
TAAGGAGCAGCTGCATAAGTACGTGAGAGAGCTGGAGCAGGCCAACGATGACCTGGAGCGAGCCAAACGAGCAACAATAG
TATCCCTGGAAGACTTTGAACAAAGGCTAAATCAGGCCATTGAACGAAATGCGTTTTTAGAAAGTGAACTTGATGAAAAG
GAGTCTTTGTTGGTTTCTGTACAGAGGTTAAAGGATGAAGCACGAGATCTAAGGCAAGAACTAGCGGTTCGGGAAAGACA
ACAGGAAGTGACCCGCAAGTCGGCTCCCAGCTCCCCGACCCTGGACTGTGAGAAGATGGACTCTGCTGTCCAGGCCTCGC
TCTCCTTGCCGGCTACTCCTGTTGGCAAAGGAACGGAAAACAGTTTTCCTTCTCCAAAAGCTATACCAAATGGTTTTGGA
ACCAGTCCACTGACTCCATCAGCTAGGATCTCAGCACTAAACATTGTGGGGGATCTCTTACGGAAAGTGGGGGCTTTAGA
ATCCAAGTTAGCAGCTTGCAGGAATTTTGCAAAGGACCAGGCAGCACGGAAGTCGTATATTTCAGGGAATGTTAACTGTG
GAGTGATGAATAGCAATGGCACCAAGTTCTCTCGATCAGGGCACACATCTTTCTTCGACAAAGGCTCCTCCTCCAGCTGT
GCGATCCGGGCCTCCAGCCGCCGCTTCTCATCCAGCAGTGCGGACCTGGCCGGGCGAGGGGGCAGTGACAGCACA
ATGGATGGTGAAGATATACCAAATTTTTCAAGTTTAAAGGAAGAAAATGCTTATTGGAAGGAACTTTCCTTGAAGTATAA
GCAAAGCTTCCAGGAAGCTCGGGATGAGCTGGTTGAATTCCAGGAAGGAAGCAGAGAATTAGAAGCAGAGTTGGAGGCGC
AGTTAGAACAGGCAGAGCAAAGAAACAGAGACCTACAAGCCGATAACCAAAGACTGAAATACGAAGTGGAAGCATTAAAG
GAGAAACTAGAACATCAGTATGCACAGAGCTACAAGCAGGTTTCTGTATTAGAAGACGATTTAAGTCAGACTAGGGCCAT
TAAGGAGCAGCTGCATAAGTACGTGAGAGAGCTGGAGCAGGCCAACGATGACCTGGAGCGAGCCAAACGAGCAACAATAG
TATCCCTGGAAGACTTTGAACAAAGGCTAAATCAGGCCATTGAACGAAATGCGTTTTTAGAAAGTGAACTTGATGAAAAG
GAGTCTTTGTTGGTTTCTGTACAGAGGTTAAAGGATGAAGCACGAGATCTAAGGCAAGAACTAGCGGTTCGGGAAAGACA
ACAGGAAGTGACCCGCAAGTCGGCTCCCAGCTCCCCGACCCTGGACTGTGAGAAGATGGACTCTGCTGTCCAGGCCTCGC
TCTCCTTGCCGGCTACTCCTGTTGGCAAAGGAACGGAAAACAGTTTTCCTTCTCCAAAAGCTATACCAAATGGTTTTGGA
ACCAGTCCACTGACTCCATCAGCTAGGATCTCAGCACTAAACATTGTGGGGGATCTCTTACGGAAAGTGGGGGCTTTAGA
ATCCAAGTTAGCAGCTTGCAGGAATTTTGCAAAGGACCAGGCAGCACGGAAGTCGTATATTTCAGGGAATGTTAACTGTG
GAGTGATGAATAGCAATGGCACCAAGTTCTCTCGATCAGGGCACACATCTTTCTTCGACAAAGGCTCCTCCTCCAGCTGT
GCGATCCGGGCCTCCAGCCGCCGCTTCTCATCCAGCAGTGCGGACCTGGCCGGGCGAGGGGGCAGTGACAGCACA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 7 .09 RPM |
| SRP017611_kidney | 19 .68 RPM |
| SRP017611_brain | 38 .71 RPM |
| SRP040447_lung | 19 .55 RPM |
| SRP040447_skeletal_muscle | 15 .60 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000014341 | ortholog_one2one | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000019614 | within_species_paralog | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000008744 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000027930 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000006517 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_626 | 74.26 | 57.97 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000012878 retrocopies