RetrogeneDB ID: | retro_cpor_626 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_20:6637306..6637902(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDEL1 | ||
Ensembl ID: | ENSCPOG00000012878 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.26 % |
Parental protein coverage: | 57.97 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LHKYVRELEQANDDLER-AKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQ |
LHK.VRELE.ANDDL.R.AK.AT..SLED.EQRL.QA.E.N...ES.LDEK..LL.SVQR.KD.ARDLRQ | |
Retrocopy | LHKHVRELEPANDDLGRGAKKATALSLEDLEQRLSQATE*NTLVESKLDEKKFLLDSVQR*KDAARDLRQ |
Parental | ELAVRERQQEVTRKSAPSSPTLDCEKMDSAVQASLSLPATPVGKGTENSFPSPKAIPNGFGTSPLTPSAR |
ELAV.E.QQ..TRKSAPS.PT.D.EK.DSAVQA.LSL.A.PV.K.TENSF.S.KA.PN.FGTSPLTPS.R | |
Retrocopy | ELAVQEKQQ-MTRKSAPSAPTVDFEKRDSAVQALLSLLAIPVAKATENSF-SLKAVPNNFGTSPLTPSGR |
Parental | ISALNIVGDLLRKVGALESKLAACRNFAKDQAARKSYISGNVNCGVMNSNG-TKFSRSGHTS |
ISALNIVGD.LRKVGA.ESKLAACRNFAKDQAA.K.YIS.N.N.GVM.SNG..KFS.S.H.. | |
Retrocopy | ISALNIVGDPLRKVGASESKLAACRNFAKDQAAGKFYISENINHGVMTSNG<QKFSQSRHST |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 38 .71 RPM |
SRP017611_kidney | 0 .00 RPM | 19 .68 RPM |
SRP017611_liver | 0 .00 RPM | 7 .09 RPM |
SRP040447_lung | 0 .00 RPM | 19 .55 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 15 .60 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014341 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000012878 | 1 retrocopy |
retro_cpor_626 ,
|
Cavia porcellus | ENSCPOG00000019614 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000008744 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000027930 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000006517 | 1 retrocopy |