Parental gene:

PTBP1, ENSECAG00000018845

Aliases:None
Description:polypyrimidine tract binding protein 1 [Source:HGNC Symbol;Acc:9583]
Organism:Horse (Equus caballus)
Coordinates:7:37504..44917(+)


>ENSECAG00000018845
CTCCGCAGCATCGTCCCAGACATAGCAGTTGGTACAAAGCGGGGATCCGACGAGCTCTTCTCTGCCTGCGTCACCAACGG
ACCCTTTATCATGAGCAGCGGCTCGGCCTCCGCAGCCAACGGGAATGACAGCAAGAAGTTCAAGGGCGACAGCAGGAGCG
CAGGCGTGCCCTCCCGCGTCATCCACATCCGCAAGCTGCCCAATGACGTCACCGAGGGCGAGGTCATCTCTCTGGGGCTG
CCCTTCGGGAAGGTTACCAACCTCCTGATGCTGAAAGGGAAGAACCAGGCCTTCATCGAGATGAACACGGAGGAGGCCGC
CAACACCATGGTGAACTACTACACGTCAGTGACGCCCGTGCTGCGCGGCCAGCCCATCTACATCCAGTTCTCCAACCACA
AGGAGCTCAAGACCGACAGCTCGCCCAACCAGGCGCGCGCCCAGGCAGCCCTGCAGGCCGTGAACTCGGTCCAGTCAGGA
AATCTGGCCCTGGCCGCCTCGGCCGCCGCGGTGGACGCCGGGATGGCGATGGCCGGCCAGAGCCCGGTGCTGAGGATCAT
CGTGGAGAATCTGTTCTACCCGGTGACCCTGGACGTGCTCCACCAGATCTTCTCCAAGTTCGGCACGGTGCTGAAAATCA
TCACCTTCACCAAGAACAACCAGTTCCAGGCGCTGCTGCAGTACGCGGAGCCCGTGAGCGCCCAGCACGCCAAGCTGTTG
CTGGACGCCCAGAACATCTATAACGCCCGCTGCACGCTGCGCATCGACTTCTCCAAAACCAGCCTCAACGTCAAGTACAA
CAACGACAAGAGCCGCGACTACACGCGCCCCGACCTGCCCTCGGGCGACAGCCAGCCCTCGCTGGACCAGACCATGGCCG
CGGCCTTCGGTGCGCCTGGTATAATGTCAGCCTCTCCGTATGCAGGAGCTGGTTTCCCTCCCACCTTTGCCATTCCTCAA
GCCGCAGGCCTCTCTGTCCCCAACGTGCACGGGGCGCTGGCCCCCCTGGCCATCCCGTCGGCAGCGGCAGCGGCAGCAGC
GGGCAGGATCGCCCTCCCGGGCCTGGCTGGGGCCGGGAACTCTGTGCTGCTGGTCAGCAACCTGAACCCCGAGAGAGTCA
CACCCCAAAGCCTCTTTATTCTTTTCGGCGTGTACGGCGACGTGCAGCGGGTGAAGATCCTTTTCAACAAGAAGGAGAAC
GCGCTGGTGCAGATGGCCGACGGCAGCCAGGCCCAGCTGGCCATGAGCCACCTCAACGGGCACAAGCTGCACGGGAAGCC
GGTGCGCATCACGCTGTCCAAGCACCAGAACGTGCAGCTGCCCCGCGAGGGCCAGGAGGACCAGGGCCTCACCAAGGACT
ACGGCAGCTCGCCGCTGCACCGCTTCAAGAAGCCGGGCTCCAAGAACTTCCAGAACATCTTCCCGCCCTCCGCCACCCTG
CACCTCTCCAACATCCCGCCCTCCATATCCGAGGACGACCTCAAGATCCTCTTCTCCAGCAACGGCGGGATCGTCATGGG
GTTCAAGTTCTTCCAAAAGGACCGGAAGATGGCGCTGATCCAGATGGGCTCCGTGGAGGAGGCGATCCAGGCGCTCATCG
ACCTGCACAACCACGACCTGGGCGAGAACCACCACCTGCGGGTCTCTTTCTCCAAGTCCACCATCTAG

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 153 .79 RPM
SRP021940_embryo 263 .48 RPM
SRP021940_cerebellum 27 .32 RPM
SRP021940_testis 80 .89 RPM
SRP021940_placental_villous 109 .98 RPM
SRP021940_articular_cartilage 102 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000020162 ortholog_one2one 1 retrogene
retro_cjac_1901,
Ciona savignyi ENSCSAVG00000007421 ortholog_one2many 1 retrogene
retro_csav_17,
Echinops telfairi ENSETEG00000006890 ortholog_one2many 1 retrogene
retro_etel_1573,
Homo sapiens ENSG00000011304 ortholog_one2one 1 retrogene
retro_hsap_1354,
Gorilla gorilla ENSGGOG00000005090 ortholog_one2one 1 retrogene
retro_ggor_1054,
Macropus eugenii ENSMEUG00000006710 ortholog_one2one 2 retrogenes
retro_meug_1447, retro_meug_67,
Myotis lucifugus ENSMLUG00000003320 ortholog_one2one 1 retrogene
retro_mluc_755,
Mus musculus ENSMUSG00000006498 ortholog_one2one 1 retrogene
retro_mmus_1072,
Nomascus leucogenys ENSNLEG00000000864 ortholog_one2one 1 retrogene
retro_nleu_1834,
Pongo abelii ENSPPYG00000009289 ortholog_one2one 1 retrogene
retro_pabe_1122,
Pan troglodytes ENSPTRG00000010165 ortholog_one2one 1 retrogene
retro_ptro_928,
Rattus norvegicus ENSRNOG00000010448 ortholog_one2many 2 retrogenes
retro_rnor_1994, retro_rnor_2478,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_330 88.56 65.59
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Download FASTA sequences of all ENSECAG00000018845 retrocopies