Parental gene: | Ptbp1, ENSRNOG00000010448 |
| Aliases: | Ptbp1, Ptb, Pybp, Pybp1, Pybp2 |
| Description: | polypyrimidine tract-binding protein 1 isoform b [Source:RefSeq peptide;Acc:NP_071961] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 7:12833687..12843440(-) |
>ENSRNOG00000010448
ATGGACGGCATCGTCCCAGACATAGCAGTCGGTACAAAGCGGGGATCCGACGAGCTCTTCTCCACGTGTGTCAGCAACGG
CCCCTTCATCATGAGCAGCTCGGCCTCAGCAGCCAACGGAAATGATAGCAAGAAGTTCAAAGGTGATAACAGGAGCACAG
GAGTTCCTTCCAGAGTCATCCATGTCCGAAAGCTACCTAGTGATGTCACTGAGGGCGAGGTCATCTCCCTGGGGCTGCCC
TTTGGGAAAGTTACCAACCTCCTTATGCTGAAGGGGAAGAACCAGGCCTTCATTGAAATGAGCACAGAGGAGGCTGCCAA
CACTATGGTTAACTACTACACATCGGTGGCGCCAGTGCTTCGTGGACAGCCCATCTACATCCAGTTCTCCAACCACAAGG
AGCTCAAAACCGACAGCTCGCCCAACCAGGCACGTGCCCAGGCAGCCCTGCAGGCTGTGAACTCCGTACAGTCAGGAAAC
CTGGCCTTGGCAGCCTCTGCTGCTGCCGTGGATGCAGGAATGGCAATGGCAGGCCAGAGCCCAGTGCTCAGGATCATTGT
GGAGAACCTTTTCTACCCAGTGACACTGGACGTGCTGCACCAGATCTTCTCGAAGTTTGGCACAGTCCTGAAGATCATCA
CGTTCACCAAGAACAACCAGTTCCAGGCGCTGCTGCAGTATGCTGACCCTGTGAGCGCCCAGCATGCCAAGCTGTCCCTG
GATGGCCAGAACATCTACAATGCCTGCTGCACGCTGCGCATCGACTTCTCCAAGCTCACCAGTCTCAACGTCAAATACAA
CAACGACAAGAGCCGAGACTACACACGCCCTGACCTGCCCTCTGGAGACAGCCAGCCATCACTGGATCAGACCATGGCAG
CAGCCTTTGGTGCGCCCGGCATAATGTCAGCCTCTCCGTATGCAGGAGTTCCCTCCCACCTTTGCCATCCCTCAGTTGCA
GGCCTCTCTGTTCCTAATGTCCATGGAGCCCTGGCACCCCTGGCCATACCCTCTGCTGCTGCTGCTGCTGCTGCAGCCGG
CCGCATTGCCATCCCAGGGCTGGCAGGCGCCGGGAATTCCGTCCTTTTGGTCAGCAACTTGAACCCTGAGAGAGTCACAC
CCCAAAGCCTCTTTATTCTCTTCGGCGTCTACGGTGATGTGCAGCGGGTGAAGATCCTGTTCAACAAGAAGGAGAACGCA
CTTGTGCAGATGGCAGACGGCAGCCAGGCCCAGCTGGCCATGAGCCACCTGAACGGGCACAAGCTGCATGGGAAGTCAGT
GCGCATCACCCTGTCAAAGCACCAGAGTGTGCAGCTGCCTCGTGAGGGACAGGAGGACCAGGGCCTGACCAAGGACTATG
GCAGCTCACCGCTGCACCGCTTCAAGAAACCTGGCTCCAAGAACTTTCAGAACATCTTTCCTCCCTCAGCTACCCTGCAC
CTCTCCAACATCCCGCCCTCTGTGTCAGAGGATGACCTCAAGAGCCTCTTCTCCAGCAATGGCGGTGTGGTCAAAGGCTT
CAAGTTCTTCCAGAAGGACCGCAAGATGGCACTGATCCAGATGGGCTCTGTGGAGGAGGCAGTGCAGGCACTAATTGAGC
TGCACAACCATGACCTGGGCGAGAACCACCACCTGCGAGTGTCCTTTTCCAAGTCCACCATCTAG
ATGGACGGCATCGTCCCAGACATAGCAGTCGGTACAAAGCGGGGATCCGACGAGCTCTTCTCCACGTGTGTCAGCAACGG
CCCCTTCATCATGAGCAGCTCGGCCTCAGCAGCCAACGGAAATGATAGCAAGAAGTTCAAAGGTGATAACAGGAGCACAG
GAGTTCCTTCCAGAGTCATCCATGTCCGAAAGCTACCTAGTGATGTCACTGAGGGCGAGGTCATCTCCCTGGGGCTGCCC
TTTGGGAAAGTTACCAACCTCCTTATGCTGAAGGGGAAGAACCAGGCCTTCATTGAAATGAGCACAGAGGAGGCTGCCAA
CACTATGGTTAACTACTACACATCGGTGGCGCCAGTGCTTCGTGGACAGCCCATCTACATCCAGTTCTCCAACCACAAGG
AGCTCAAAACCGACAGCTCGCCCAACCAGGCACGTGCCCAGGCAGCCCTGCAGGCTGTGAACTCCGTACAGTCAGGAAAC
CTGGCCTTGGCAGCCTCTGCTGCTGCCGTGGATGCAGGAATGGCAATGGCAGGCCAGAGCCCAGTGCTCAGGATCATTGT
GGAGAACCTTTTCTACCCAGTGACACTGGACGTGCTGCACCAGATCTTCTCGAAGTTTGGCACAGTCCTGAAGATCATCA
CGTTCACCAAGAACAACCAGTTCCAGGCGCTGCTGCAGTATGCTGACCCTGTGAGCGCCCAGCATGCCAAGCTGTCCCTG
GATGGCCAGAACATCTACAATGCCTGCTGCACGCTGCGCATCGACTTCTCCAAGCTCACCAGTCTCAACGTCAAATACAA
CAACGACAAGAGCCGAGACTACACACGCCCTGACCTGCCCTCTGGAGACAGCCAGCCATCACTGGATCAGACCATGGCAG
CAGCCTTTGGTGCGCCCGGCATAATGTCAGCCTCTCCGTATGCAGGAGTTCCCTCCCACCTTTGCCATCCCTCAGTTGCA
GGCCTCTCTGTTCCTAATGTCCATGGAGCCCTGGCACCCCTGGCCATACCCTCTGCTGCTGCTGCTGCTGCTGCAGCCGG
CCGCATTGCCATCCCAGGGCTGGCAGGCGCCGGGAATTCCGTCCTTTTGGTCAGCAACTTGAACCCTGAGAGAGTCACAC
CCCAAAGCCTCTTTATTCTCTTCGGCGTCTACGGTGATGTGCAGCGGGTGAAGATCCTGTTCAACAAGAAGGAGAACGCA
CTTGTGCAGATGGCAGACGGCAGCCAGGCCCAGCTGGCCATGAGCCACCTGAACGGGCACAAGCTGCATGGGAAGTCAGT
GCGCATCACCCTGTCAAAGCACCAGAGTGTGCAGCTGCCTCGTGAGGGACAGGAGGACCAGGGCCTGACCAAGGACTATG
GCAGCTCACCGCTGCACCGCTTCAAGAAACCTGGCTCCAAGAACTTTCAGAACATCTTTCCTCCCTCAGCTACCCTGCAC
CTCTCCAACATCCCGCCCTCTGTGTCAGAGGATGACCTCAAGAGCCTCTTCTCCAGCAATGGCGGTGTGGTCAAAGGCTT
CAAGTTCTTCCAGAAGGACCGCAAGATGGCACTGATCCAGATGGGCTCTGTGGAGGAGGCAGTGCAGGCACTAATTGAGC
TGCACAACCATGACCTGGGCGAGAACCACCACCTGCGAGTGTCCTTTTCCAAGTCCACCATCTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 66 .90 RPM |
| SRP017611_kidney | 189 .04 RPM |
| SRP017611_brain | 33 .36 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000020162 | possible_ortholog | 1 retrogene | |
| Ciona savignyi | ENSCSAVG00000007421 | ortholog_one2many | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000000882 | possible_ortholog | 1 retrogene | |
| Equus caballus | ENSECAG00000018845 | ortholog_one2many | 1 retrogene | |
| Echinops telfairi | ENSETEG00000006890 | ortholog_many2many | 1 retrogene | |
| Homo sapiens | ENSG00000011304 | possible_ortholog | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000005090 | possible_ortholog | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000006710 | ortholog_one2many | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000003320 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000006498 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000000864 | possible_ortholog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000009289 | possible_ortholog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000010165 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_1994 | 85.13 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_2478 | 84.51 | 53.07 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000010448 retrocopies