Parental gene:

Ptbp1, ENSRNOG00000010448

Aliases:Ptbp1, Ptb, Pybp, Pybp1, Pybp2
Description:polypyrimidine tract-binding protein 1 isoform b [Source:RefSeq peptide;Acc:NP_071961]
Organism:Rat (Rattus norvegicus)
Coordinates:7:12833687..12843440(-)


>ENSRNOG00000010448
ATGGACGGCATCGTCCCAGACATAGCAGTCGGTACAAAGCGGGGATCCGACGAGCTCTTCTCCACGTGTGTCAGCAACGG
CCCCTTCATCATGAGCAGCTCGGCCTCAGCAGCCAACGGAAATGATAGCAAGAAGTTCAAAGGTGATAACAGGAGCACAG
GAGTTCCTTCCAGAGTCATCCATGTCCGAAAGCTACCTAGTGATGTCACTGAGGGCGAGGTCATCTCCCTGGGGCTGCCC
TTTGGGAAAGTTACCAACCTCCTTATGCTGAAGGGGAAGAACCAGGCCTTCATTGAAATGAGCACAGAGGAGGCTGCCAA
CACTATGGTTAACTACTACACATCGGTGGCGCCAGTGCTTCGTGGACAGCCCATCTACATCCAGTTCTCCAACCACAAGG
AGCTCAAAACCGACAGCTCGCCCAACCAGGCACGTGCCCAGGCAGCCCTGCAGGCTGTGAACTCCGTACAGTCAGGAAAC
CTGGCCTTGGCAGCCTCTGCTGCTGCCGTGGATGCAGGAATGGCAATGGCAGGCCAGAGCCCAGTGCTCAGGATCATTGT
GGAGAACCTTTTCTACCCAGTGACACTGGACGTGCTGCACCAGATCTTCTCGAAGTTTGGCACAGTCCTGAAGATCATCA
CGTTCACCAAGAACAACCAGTTCCAGGCGCTGCTGCAGTATGCTGACCCTGTGAGCGCCCAGCATGCCAAGCTGTCCCTG
GATGGCCAGAACATCTACAATGCCTGCTGCACGCTGCGCATCGACTTCTCCAAGCTCACCAGTCTCAACGTCAAATACAA
CAACGACAAGAGCCGAGACTACACACGCCCTGACCTGCCCTCTGGAGACAGCCAGCCATCACTGGATCAGACCATGGCAG
CAGCCTTTGGTGCGCCCGGCATAATGTCAGCCTCTCCGTATGCAGGAGTTCCCTCCCACCTTTGCCATCCCTCAGTTGCA
GGCCTCTCTGTTCCTAATGTCCATGGAGCCCTGGCACCCCTGGCCATACCCTCTGCTGCTGCTGCTGCTGCTGCAGCCGG
CCGCATTGCCATCCCAGGGCTGGCAGGCGCCGGGAATTCCGTCCTTTTGGTCAGCAACTTGAACCCTGAGAGAGTCACAC
CCCAAAGCCTCTTTATTCTCTTCGGCGTCTACGGTGATGTGCAGCGGGTGAAGATCCTGTTCAACAAGAAGGAGAACGCA
CTTGTGCAGATGGCAGACGGCAGCCAGGCCCAGCTGGCCATGAGCCACCTGAACGGGCACAAGCTGCATGGGAAGTCAGT
GCGCATCACCCTGTCAAAGCACCAGAGTGTGCAGCTGCCTCGTGAGGGACAGGAGGACCAGGGCCTGACCAAGGACTATG
GCAGCTCACCGCTGCACCGCTTCAAGAAACCTGGCTCCAAGAACTTTCAGAACATCTTTCCTCCCTCAGCTACCCTGCAC
CTCTCCAACATCCCGCCCTCTGTGTCAGAGGATGACCTCAAGAGCCTCTTCTCCAGCAATGGCGGTGTGGTCAAAGGCTT
CAAGTTCTTCCAGAAGGACCGCAAGATGGCACTGATCCAGATGGGCTCTGTGGAGGAGGCAGTGCAGGCACTAATTGAGC
TGCACAACCATGACCTGGGCGAGAACCACCACCTGCGAGTGTCCTTTTCCAAGTCCACCATCTAG

Library Parental gene expression (RPM)
SRP017611_brain 33 .36 RPM
SRP017611_kidney 189 .04 RPM
SRP017611_liver 66 .90 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000020162 possible_ortholog 1 retrogene
retro_cjac_1901,
Ciona savignyi ENSCSAVG00000007421 ortholog_one2many 1 retrogene
retro_csav_17,
Dasypus novemcinctus ENSDNOG00000000882 possible_ortholog 1 retrogene
retro_dnov_982,
Equus caballus ENSECAG00000018845 ortholog_one2many 1 retrogene
retro_ecab_330,
Echinops telfairi ENSETEG00000006890 ortholog_many2many 1 retrogene
retro_etel_1573,
Homo sapiens ENSG00000011304 possible_ortholog 1 retrogene
retro_hsap_1354,
Gorilla gorilla ENSGGOG00000005090 possible_ortholog 1 retrogene
retro_ggor_1054,
Macropus eugenii ENSMEUG00000006710 ortholog_one2many 2 retrogenes
retro_meug_1447, retro_meug_67,
Myotis lucifugus ENSMLUG00000003320 ortholog_one2many 1 retrogene
retro_mluc_755,
Mus musculus ENSMUSG00000006498 ortholog_one2many 1 retrogene
retro_mmus_1072,
Nomascus leucogenys ENSNLEG00000000864 possible_ortholog 1 retrogene
retro_nleu_1834,
Pongo abelii ENSPPYG00000009289 possible_ortholog 1 retrogene
retro_pabe_1122,
Pan troglodytes ENSPTRG00000010165 possible_ortholog 1 retrogene
retro_ptro_928,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1994 85.13 100.00
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2. retro_rnor_2478 84.51 53.07
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Download FASTA sequences of all ENSRNOG00000010448 retrocopies