Parental gene:

PBDC1, ENSEEUG00000001116

Aliases:None
Description:polysaccharide biosynthesis domain containing 1 [Source:HGNC Symbol;Acc:28790]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_1561:744..15758(+)


>ENSEEUG00000001116
ATGGAGGCGACTAAAAGAATGGAGGATTCGGTTTCCGGGGAATTGGTGTCAGTAGCACATGCTCTTTCTCTCCCAGCTGA
ATCTTACGGCAATGATCCTGATATTGAGATGGCTTGGGCCATGAAAGCCATGCAACATGCTGAGGTCTACTACAAGCTTA
TTTCATCAGTTGACCCACAGTTTCTGAAGCTCACGAAAGTTGATGACCAAATTTATTCTGAATTTCGGGAACGATTTGAG
AATCTCAGGGTAGATGTATTGGACCCAGAAGAGCTGAAATCAGAATCAGCTAAAGAGAAATGGAGGCCATTCTGCTTGAA
ATTTGATGGGATTGTAGAAGATTTCAACTATGGTACTTTACTGCGACTGGATTGTTCTCAAGGCTACACTGAAGAAAATA
CCATCTTTGCCCCCAGAATACAGTTTTTTGCCATTGAAATTGCTCGAAATCGGGAAGGCTGTAACAAAGCAGTTTACATT
AGTGTTCAGGACAAAGAAGAGAAAGGAACCAGTGATGAAGAAGAAAGTAGAACTCAGAGTGAAGAAGAAAAGGGAAAAGC
CAGCAGAGAAGAAGAAAAAGAAGCTAATAAAGAAGTCATTAAAAGTGGTGAAACAACTATGTGT

Library Parental gene expression (RPM)
SRP017611_liver 9 .32 RPM
SRP017611_kidney 18 .00 RPM
SRP017611_brain 14 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000017228 ortholog_one2many 2 retrogenes
retro_cfam_1588, retro_cfam_944,
Callithrix jacchus ENSCJAG00000018571 ortholog_one2many 1 retrogene
retro_cjac_1880,
Equus caballus ENSECAG00000009882 ortholog_one2one 1 retrogene
retro_ecab_532,
Monodelphis domestica ENSMODG00000009685 ortholog_one2one 2 retrogenes
retro_mdom_1002, retro_mdom_572,
Mus musculus ENSMUSG00000031226 ortholog_one2one 1 retrogene
retro_mmus_1569,
Oryctolagus cuniculus ENSOCUG00000001088 ortholog_one2one 3 retrogenes
retro_ocun_1017, retro_ocun_1402, retro_ocun_595,
Otolemur garnettii ENSOGAG00000015205 ortholog_one2many 1 retrogene
retro_ogar_3063,
Rattus norvegicus ENSRNOG00000002662 ortholog_one2one 3 retrogenes
retro_rnor_1703, retro_rnor_1705, retro_rnor_826,
Sarcophilus harrisii ENSSHAG00000017872 ortholog_one2one 1 retrogene
retro_shar_132,
Tupaia belangeri ENSTBEG00000003411 ortholog_one2one 3 retrogenes
retro_tbel_3448, retro_tbel_494, retro_tbel_979,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_377 97.78 86.54
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Download FASTA sequences of all ENSEEUG00000001116 retrocopies