Parental gene: | ARF1, ENSEEUG00000004638 |
| Aliases: | None |
| Description: | ADP-ribosylation factor 1 [Source:HGNC Symbol;Acc:652] |
| Organism: | Hedgehog (Erinaceus europaeus) |
| Coordinates: | GeneScaffold_8565:5316..6257(+) |
>ENSEEUG00000004638
ATGGGGAATATCTTTGCAAACCTCTTCAAAGGCCTTTTTGGCAAAAAAGAAATGCGTATTCTCATGGTGGGCCTGGATGC
TGCAGGGAAGACCACCATCCTGTACAAATTGAAGTTGGGTGAAATTGTGACCACCATTCCTACTATCGGCTTCAACGTAG
AAACTGTGGAGTACAAGAACATCAGTTTCACCGTGTGGGACGTGGGTGGCCAGGACAAGATCCGGCCTCTGTGGCGCCAC
TACTTCCAGAACACACAAGGTCTGATCTTTGTGGTTGACAGCAATGACAGAGAGCGTGTGAACGAGGCCCGTGAGGAGCT
CATGAGGATGTTGGCTGAAGATGAGCTCAGGGATGCCGTTCTGCTTGTGTTCGCTAATAAGCAGGATCTTCCTAATGCCA
TGAATGCGGCTGAGATCACGGACAAGCTGGGCCTGCACTCCCTGCGCCACAGGAACTGGTACATTCAGGCCACCTGTGCC
ACCAGCGGGGATGGGCTCTATGAGGGACTGGACTGGCTGTCCAATCAGCTCCGGAACCAGAAGTGA
ATGGGGAATATCTTTGCAAACCTCTTCAAAGGCCTTTTTGGCAAAAAAGAAATGCGTATTCTCATGGTGGGCCTGGATGC
TGCAGGGAAGACCACCATCCTGTACAAATTGAAGTTGGGTGAAATTGTGACCACCATTCCTACTATCGGCTTCAACGTAG
AAACTGTGGAGTACAAGAACATCAGTTTCACCGTGTGGGACGTGGGTGGCCAGGACAAGATCCGGCCTCTGTGGCGCCAC
TACTTCCAGAACACACAAGGTCTGATCTTTGTGGTTGACAGCAATGACAGAGAGCGTGTGAACGAGGCCCGTGAGGAGCT
CATGAGGATGTTGGCTGAAGATGAGCTCAGGGATGCCGTTCTGCTTGTGTTCGCTAATAAGCAGGATCTTCCTAATGCCA
TGAATGCGGCTGAGATCACGGACAAGCTGGGCCTGCACTCCCTGCGCCACAGGAACTGGTACATTCAGGCCACCTGTGCC
ACCAGCGGGGATGGGCTCTATGAGGGACTGGACTGGCTGTCCAATCAGCTCCGGAACCAGAAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 81 .51 RPM |
| SRP017611_kidney | 212 .48 RPM |
| SRP017611_brain | 139 .39 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anas platyrhynchos | ENSAPLG00000004509 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000016671 | possible_ortholog | 10 retrogenes | |
| Ciona savignyi | ENSCSAVG00000007011 | possible_ortholog | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000010454 | ortholog_one2one | 3 retrogenes | |
| Gallus gallus | ENSGALG00000005393 | ortholog_one2one | 1 retrogene | |
| Latimeria chalumnae | ENSLACG00000019009 | possible_ortholog | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000007020 | ortholog_one2one | 6 retrogenes | |
| Macaca mulatta | ENSMMUG00000002792 | possible_ortholog | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000023645 | possible_ortholog | 2 retrogenes | |
| Procavia capensis | ENSPCAG00000014202 | possible_ortholog | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000002066 | ortholog_one2one | 2 retrogenes | |
| Tetraodon nigroviridis | ENSTNIG00000011685 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_eeur_76 | 81.44 | 53.04 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_eeur_328 | 87.35 | 85.64 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_eeur_660 | 80.52 | 83.43 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_eeur_684 | 55.74 | 66.85 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSEEUG00000004638 retrocopies