RetrogeneDB ID: | retro_ocun_247 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 8:19022668..19023214(+) | ||
Located in intron of: | ENSOCUG00000007479 | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000012000 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARF1 | ||
Ensembl ID: | ENSOCUG00000023645 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor 1 [Source:HGNC Symbol;Acc:652] |
Percent Identity: | 97.24 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGG |
MGNIFANLFKGLFGKKEM.ILMVGLDAAGKT.IL.KLKLGEIV.TIPTIGFNVETVEYKNISFTVWDVGG | |
Retrocopy | MGNIFANLFKGLFGKKEMHILMVGLDAAGKTRILHKLKLGEIVPTIPTIGFNVETVEYKNISFTVWDVGG |
Parental | QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEIT |
QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEIT | |
Retrocopy | QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEIT |
Parental | DKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK |
DKLGLHSLRHRNWYIQATCAT.GDGLYEGLDWLSNQLRNQK | |
Retrocopy | DKLGLHSLRHRNWYIQATCATNGDGLYEGLDWLSNQLRNQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 9 .93 RPM | 79 .36 RPM |
SRP017611_kidney | 10 .03 RPM | 83 .42 RPM |
SRP017611_liver | 2 .85 RPM | 29 .21 RPM |