RetrogeneDB ID: | retro_eeur_328 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_255590:83..559(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000003063 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARF1 | ||
Ensembl ID: | ENSEEUG00000004638 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor 1 [Source:HGNC Symbol;Acc:652] |
Percent Identity: | 87.35 % |
Parental protein coverage: | 85.64 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 11 |
Parental | MVGLDAAGK-TTILYK-LKL-GEIVT-TIPTIGF-NVETVEYKNISFTVW-DVGG-QDKIRPLW-RHYF- |
.VG.DAAGK.TTILYK.LKL.GEIVT.TIPT.GF.NVETVEYK.ISFTVW.DVG..QDKIRPLW.RHYF. | |
Retrocopy | IVGPDAAGK>TTILYK>LKL>GEIVT>TIPTTGF>NVETVEYKDISFTVW>DVGS>QDKIRPLW>RHYF> |
Parental | QNT-QGLIFVVDS-NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH |
QNT.Q.LI.VVDS.NDRERVNEA.EELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH | |
Retrocopy | QNT>QSLISVVDS>NDRERVNEACEELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH |
Parental | RNWYIQATCATSGDGLYEGLDWLSNQ |
RN.YIQATCATSGDGLYEGLDWL.NQ | |
Retrocopy | RNRYIQATCATSGDGLYEGLDWLRNQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 139 .39 RPM |
SRP017611_kidney | 0 .00 RPM | 212 .48 RPM |
SRP017611_liver | 0 .00 RPM | 81 .51 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anas platyrhynchos | ENSAPLG00000004509 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016671 | 10 retrocopies | |
Ciona savignyi | ENSCSAVG00000007011 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000010454 | 3 retrocopies | |
Erinaceus europaeus | ENSEEUG00000004638 | 4 retrocopies | |
Gallus gallus | ENSGALG00000005393 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000019009 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007020 | 6 retrocopies | |
Macaca mulatta | ENSMMUG00000002792 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000023645 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000014202 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000002066 | 2 retrocopies | |
Tetraodon nigroviridis | ENSTNIG00000011685 | 1 retrocopy |