RetrogeneDB ID: | retro_eeur_684 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_69081:1685..2049(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000000931 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARF1 | ||
Ensembl ID: | ENSEEUG00000004638 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor 1 [Source:HGNC Symbol;Acc:652] |
Percent Identity: | 55.74 % |
Parental protein coverage: | 66.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KNISFTVWDVGGQDKIRPLWRHYFQN-TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANK |
....F.VW..GGQDKIR...R.Y....TQ.LI.VVD..DR.R..E.R.EL.R.....E.RDA..L.FANK | |
Retrocopy | EEVNFKVWEAGGQDKIRQFGRPYYTR>TQVLIVVVDCADRDRIDETRQELHRIINDREMRDAIILIFANK |
Parental | QDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN |
QDLP.AM...EI..KLGL...R.RNWY.Q..CATSGDGLYEGL.WL...... | |
Retrocopy | QDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 5 .96 RPM | 139 .39 RPM |
SRP017611_kidney | 14 .44 RPM | 212 .48 RPM |
SRP017611_liver | 10 .29 RPM | 81 .51 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anas platyrhynchos | ENSAPLG00000004509 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016671 | 10 retrocopies | |
Ciona savignyi | ENSCSAVG00000007011 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000010454 | 3 retrocopies | |
Erinaceus europaeus | ENSEEUG00000004638 | 4 retrocopies | |
Gallus gallus | ENSGALG00000005393 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000019009 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007020 | 6 retrocopies | |
Macaca mulatta | ENSMMUG00000002792 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000023645 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000014202 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000002066 | 2 retrocopies | |
Tetraodon nigroviridis | ENSTNIG00000011685 | 1 retrocopy |