Parental gene:

MMU.332, ENSMMUG00000002792

Aliases:None
Description:ADP-ribosylation factor 1 [Source:RefSeq peptide;Acc:NP_001180216]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:1:142284269..142299873(-)


>ENSMMUG00000002792
ATGGGGAACATCTTCGCCAACCTCTTCAAGGGCCTTTTTGGCAAAAAAGAAATGCGCATCCTCATGGTGGGCCTGGATGC
TGCGGGGAAGACCACGATCCTGTACAAGCTTAAGCTGGGTGAGATCGTGACCACCATTCCCACCATAGGCTTCAACGTGG
AAACCGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTGGGTGGCCAGGACAAGATCCGGCCCCTGTGGCGCCAC
TACTTCCAGAACACACAAGGCCTGATCTTCGTGGTGGACAGCAATGACAGAGAGCGCGTGAACGAGGCCCGTGAGGAGCT
CATGAGAATGCTGGCCGAGGACGAGCTCCGGGATGCTGTCCTCCTGGTGTTCGCCAACAAGCAGGACCTCCCCAACGCCA
TGAATGCAGCTGAGATCACAGACAAGCTGGGGCTGCACTCCCTACGCCACAGGAACTGGTACATTCAGGCCACCTGCGCC
ACCAGCGGTGACGGGCTCTATGAAGGACTGGACTGGCTGTCCAATCAGCTCCGGAACCAGAAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 395 .78 RPM
SRP007412_brain 146 .23 RPM
SRP007412_cerebellum 98 .35 RPM
SRP007412_heart 135 .79 RPM
SRP007412_kidney 145 .65 RPM
SRP007412_liver 254 .56 RPM
SRP007412_testis 201 .74 RPM



Species Parental gene accession Homology type Retrogenes number
Anas platyrhynchos ENSAPLG00000004509 possible_ortholog 1 retrogene
retro_apla_4,
Bos taurus ENSBTAG00000007725 possible_ortholog 2 retrogenes
retro_btau_1257, retro_btau_1390,
Callithrix jacchus ENSCJAG00000016671 possible_ortholog 10 retrogenes
retro_cjac_1295, retro_cjac_1691, retro_cjac_1719, retro_cjac_2189, retro_cjac_2896, retro_cjac_300, retro_cjac_3181, retro_cjac_3311, retro_cjac_3335, retro_cjac_390,
Ciona savignyi ENSCSAVG00000007011 possible_ortholog 1 retrogene
retro_csav_2,
Dasypus novemcinctus ENSDNOG00000010454 possible_ortholog 3 retrogenes
retro_dnov_2375, retro_dnov_2459, retro_dnov_26,
Dipodomys ordii ENSDORG00000007603 ortholog_one2one 4 retrogenes
retro_dord_31, retro_dord_351, retro_dord_409, retro_dord_573,
Erinaceus europaeus ENSEEUG00000004638 possible_ortholog 4 retrogenes
retro_eeur_328, retro_eeur_660, retro_eeur_684, retro_eeur_76,
Ficedula albicollis ENSFALG00000001088 possible_ortholog 1 retrogene
retro_falb_2,
Gallus gallus ENSGALG00000005393 ortholog_one2many 1 retrogene
retro_ggal_7,
Latimeria chalumnae ENSLACG00000019009 possible_ortholog 1 retrogene
retro_lcha_10,
Myotis lucifugus ENSMLUG00000007020 possible_ortholog 6 retrogenes
retro_mluc_1631, retro_mluc_242, retro_mluc_2605, retro_mluc_428, retro_mluc_511, retro_mluc_876,
Macaca mulatta ENSMMUG00000006968 within_species_paralog 1 retrogene
retro_mmul_174,
Macaca mulatta ENSMMUG00000018617 within_species_paralog 1 retrogene
retro_mmul_50,
Nomascus leucogenys ENSNLEG00000014137 possible_ortholog 3 retrogenes
retro_nleu_210, retro_nleu_227, retro_nleu_2929,
Otolemur garnettii ENSOGAG00000010974 possible_ortholog 4 retrogenes
retro_ogar_2431, retro_ogar_295, retro_ogar_3353, retro_ogar_974,
Ochotona princeps ENSOPRG00000015063 possible_ortholog 2 retrogenes
retro_opri_317, retro_opri_759,
Procavia capensis ENSPCAG00000014202 ortholog_one2one 2 retrogenes
retro_pcap_15, retro_pcap_23,
Pongo abelii ENSPPYG00000000148 possible_ortholog 3 retrogenes
retro_pabe_3159, retro_pabe_849, retro_pabe_965,
Pelodiscus sinensis ENSPSIG00000009767 possible_ortholog 1 retrogene
retro_psin_12,
Pan troglodytes ENSPTRG00000002066 possible_ortholog 2 retrogenes
retro_ptro_112, retro_ptro_5,
Pteropus vampyrus ENSPVAG00000007383 possible_ortholog 1 retrogene
retro_pvam_1324,
Rattus norvegicus ENSRNOG00000030591 possible_ortholog 3 retrogenes
retro_rnor_1268, retro_rnor_1348, retro_rnor_1950,
Sarcophilus harrisii ENSSHAG00000014599 possible_ortholog 3 retrogenes
retro_shar_106, retro_shar_462, retro_shar_725,
Sus scrofa ENSSSCG00000013992 possible_ortholog 2 retrogenes
retro_sscr_429, retro_sscr_82,
Ictidomys tridecemlineatus ENSSTOG00000009288 possible_ortholog 3 retrogenes
retro_itri_1754, retro_itri_273, retro_itri_363,
Taeniopygia guttata ENSTGUG00000000233 possible_ortholog 1 retrogene
retro_tgut_2,
Tetraodon nigroviridis ENSTNIG00000011685 possible_ortholog 1 retrogene
retro_tnig_19,
Vicugna pacos ENSVPAG00000003224 possible_ortholog 4 retrogenes
retro_vpac_281, retro_vpac_328, retro_vpac_6, retro_vpac_78,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_237 93.37 100.00
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2. retro_mmul_541 95.58 100.00
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3. retro_mmul_810 69.78 100.00
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Download FASTA sequences of all ENSMMUG00000002792 retrocopies