Parental gene:

RPLP0, ENSEEUG00000007553

Aliases:None
Description:ribosomal protein, large, P0 [Source:HGNC Symbol;Acc:10371]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_3869:214063..217508(-)


>ENSEEUG00000007553
ATGCCCAGGGAAGACAGGGCGACCTGGAAGTCCAACTACTTCCTGAAGATCATCCAACTTCTGGATGACTACCCGAAATG
CTTCATTGTGGGAGCAGACAATGTGGGCTCCAAGCAGATGCAGCAGATCCGCATGTCCCTGCGCGGCAAGGCCGTGGTGC
TGATGGGCAAAAACACCATGATGCGGAAGGCCATCCGCGGGCACCTGGAGAACAACCCTGCCCTGGAGAAATTGCTGCCT
CACATCCGCGGGAACGTAGGCTTTGTGTTCACCAAGGAGGATCTCACTGAGATCAGAGACATGCTGCTGGCCAATAAGGT
TCCAGCTGCTGCCCGTGCTGGTGCCATTGCCCCATGCGAGGTCACCGTGCCAGCCCAGAACACCGGCCTGGGGCCCGAGA
AGACCTCCTTCTTCCAGGCTTTGGGCATCACCACTAAGATCTCTAGGGGCACCATTGAAATCCTGAGTGATGTGCAGCTG
ATTAAGACCGGAGACAAAGAAGGAGCCAGCGAAGCCACTCTGCTGAACATGCTGAACATCTCCCCCTTCTCCGGTCTGAT
CCTCCAGCGGGTGTTTGACAATGGCAGCATCTACAACCCCGAAGTGCTGGACATCACGGAGCAAGCTCTGCTTTCTCGCT
TTCTGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAACTGTGGCTTCTGTGCCTCATTCTATC
ATCAATGGGTACAAGCGAGTCCTGGCCCTGTCTGTTGAGACAGAATACACCTTCCCGCTTGCTGAAAAGGTCAAGGCCTT
CTTGGCTGATCCGTCTGCATTTGCGGCTGCTGCTCCGGTGGCCGCCGCCGCCACCACTGCTGCTCCTGCTGCCGCGGCTC
CGGCCAAAGCTGAAGTAAAGGAGGAGTCGGAAGAGTCGGACGAGGACATGGGATTTGGTCTCTTTGACTAA

Library Parental gene expression (RPM)
SRP017611_liver 502 .26 RPM
SRP017611_kidney 623 .38 RPM
SRP017611_brain 196 .60 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000002745 ortholog_one2one 2 retrogenes
retro_chof_1115, retro_chof_2341,
Callithrix jacchus ENSCJAG00000008677 possible_ortholog 3 retrogenes
retro_cjac_1693, retro_cjac_2840, retro_cjac_786,
Cavia porcellus ENSCPOG00000021812 ortholog_one2one 5 retrogenes
retro_cpor_298, retro_cpor_449, retro_cpor_475, retro_cpor_498, retro_cpor_601,
Gorilla gorilla ENSGGOG00000026582 possible_ortholog 5 retrogenes
retro_ggor_1088, retro_ggor_1771, retro_ggor_472, retro_ggor_649, retro_ggor_650,
Macaca mulatta ENSMMUG00000009157 possible_ortholog 2 retrogenes
retro_mmul_2245, retro_mmul_939,
Mus musculus ENSMUSG00000067274 ortholog_one2many 2 retrogenes
retro_mmus_143, retro_mmus_2249,
Oryctolagus cuniculus ENSOCUG00000005749 possible_ortholog 2 retrogenes
retro_ocun_293, retro_ocun_376,
Otolemur garnettii ENSOGAG00000003843 possible_ortholog 4 retrogenes
retro_ogar_2184, retro_ogar_2294, retro_ogar_556, retro_ogar_713,
Petromyzon marinus ENSPMAG00000001339 ortholog_one2many 1 retrogene
retro_pmar_6,
Pongo abelii ENSPPYG00000005022 possible_ortholog 5 retrogenes
retro_pabe_2113, retro_pabe_3035, retro_pabe_568, retro_pabe_66, retro_pabe_749,
Rattus norvegicus ENSRNOG00000001148 ortholog_one2many 3 retrogenes
retro_rnor_1350, retro_rnor_2092, retro_rnor_2970,
Sarcophilus harrisii ENSSHAG00000001623 possible_ortholog 2 retrogenes
retro_shar_286, retro_shar_413,
Tupaia belangeri ENSTBEG00000005498 ortholog_one2one 1 retrogene
retro_tbel_3323,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_612 55.41 72.47
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Download FASTA sequences of all ENSEEUG00000007553 retrocopies