RetrogeneDB ID: | retro_chof_2341 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_67203:352..847(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP0 | ||
Ensembl ID: | ENSCHOG00000002745 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P0 [Source:HGNC Symbol;Acc:10371] |
Percent Identity: | 76.19 % |
Parental protein coverage: | 52.37 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | PCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGL |
P...T...QNT.LGPEKTSFFQA..I.TKISRGTI.ILSD..LIK.G.K.GASEATLLNMLNI..F.F.L | |
Retrocopy | PHKGTMCTQNTALGPEKTSFFQAVSINTKISRGTIKILSDMELIKIGHKLGASEATLLNMLNIT-FFFRL |
Parental | IIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDY |
IIQQVFDN..I.N.EVL.ITEETLHS.FLEGV.NVA..CLQIGYPT.ASVPHSII.GYKRVLALSVETDY | |
Retrocopy | IIQQVFDNSNICNSEVLYITEETLHSHFLEGVCNVACICLQIGYPTDASVPHSIIIGYKRVLALSVETDY |
Parental | TFPL-AEKVKAFLADPSAF-VAAAPVAA |
T..L.AEKVKAFLADPSA..VA..P.A. | |
Retrocopy | TVTL>AEKVKAFLADPSAL<VASSPTAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |