RetrogeneDB ID: | retro_rnor_2970 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:113938749..113939226(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rplp0 | ||
Ensembl ID: | ENSRNOG00000001148 | ||
Aliases: | Rplp0, Arbp | ||
Description: | 60S acidic ribosomal protein P0 [Source:UniProtKB/Swiss-Prot;Acc:P19945] |
Percent Identity: | 81.99 % |
Parental protein coverage: | 50.16 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | DYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLPHIRGNVGFVFTK |
D.PKCF.VG.D.VGSKQMQQI.M.LRGKAVVLMGKN.MM.KA.RGHLENNP.LE.LLPHI..NVG.VFTK | |
Retrocopy | DDPKCFTVGMDYVGSKQMQQICMPLRGKAVVLMGKNAMMCKAFRGHLENNPVLEDLLPHILENVGVVFTK |
Parental | EDLT-EIRDMLLANKVPAAARAGAI-APCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQL |
EDL..EIRDMLLANKVPA.ARAGA..APCEVT.P.QNT.LGPEKTSFF.ALGITTKI.RGTIEILSDVQL | |
Retrocopy | EDLM<EIRDMLLANKVPATARAGAL>APCEVTAPTQNTVLGPEKTSFF*ALGITTKIARGTIEILSDVQL |
Parental | IKTGDKVGASEATLLNMLNIS |
IK.G..VGASEATLL.MLNI. | |
Retrocopy | IKIGNQVGASEATLLYMLNIN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 204 .33 RPM |
SRP017611_kidney | 0 .00 RPM | 481 .08 RPM |
SRP017611_liver | 0 .00 RPM | 276 .68 RPM |