RetrogeneDB ID: | retro_ogar_556 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873523.1:39939415..39940365(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOGAG00000025396 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP0 | ||
Ensembl ID: | ENSOGAG00000003843 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P0 [Source:HGNC Symbol;Acc:10371] |
Percent Identity: | 92.14 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLE |
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADN.GSKQMQQI.M.LRGKAVVL.GKNTMM.KAI.GHLE | |
Retrocopy | MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNFGSKQMQQIHMPLRGKAVVLRGKNTMMLKAIQGHLE |
Parental | NNPALE-KLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQ |
.NP.LE..LL.HIRGNVGFVFTKEDLTEIRDML.ANK..AAA.AGAIAPCEVT.PAQNTGLG.EKTSFFQ | |
Retrocopy | SNPPLE<ELLTHIRGNVGFVFTKEDLTEIRDMLQANKMLAAAGAGAIAPCEVTLPAQNTGLGSEKTSFFQ |
Parental | ALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEE |
ALGITTKISRGTIEILSDVQLIKTGDKVG.SE.TLLNMLNISPFSFGLVIQQVFD.GSIYNPEVLDITEE | |
Retrocopy | ALGITTKISRGTIEILSDVQLIKTGDKVGTSEGTLLNMLNISPFSFGLVIQQVFDSGSIYNPEVLDITEE |
Parental | TLHTRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAA |
TL...FLEGVRNVASVCLQIGYPTVASVP.SIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAA | |
Retrocopy | TLPFCFLEGVRNVASVCLQIGYPTVASVPRSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAA |
Parental | PVAATTTAAPAATAAPAKVETKEESEESDEDMGFGLFD |
PVAATTTAAPAATAAPAKV.TKEESEESDEDMGFGLFD | |
Retrocopy | PVAATTTAAPAATAAPAKVDTKEESEESDEDMGFGLFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |