Parental gene:

RNF138, ENSFCAG00000014180

Aliases:None
Description:ring finger protein 138, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:17765]
Organism:Cat (Felis catus)
Coordinates:D3:55034501..55064921(+)


>ENSFCAG00000014180
ATGGCCGAGGAGCTCTCTGCGGCCACGTCCTACACCGAAGATGATTTCTACTGCCCTGTCTGTCAGGAGGTGCTCAAAAC
GCCCGTGAGGACCGCGGCCTGTCAGCACGTTTTCTGTAGAAAATGTTTCCTGACTGCAATGAGAGAAAGTGGAATACATT
GTCCCCTCTGTCGTGGAAATGTGACTAGAAGAGAGAGAGCATGTCCTGAACGGGCCTTAGACCTTGAAAATATCATGAGG
AAGTTTTCTGGTAGCTGCAGATGCTGTGCAAAACAGATTAAATTCTATCGCATGAGACATCATTACAAATCTTGTAAGAA
GTATCAAGATGAATATGGTGTTTCCTCTATCATTCCAAACTTTCAGATCTCTCAAGATTCAGTAGGGAACAGTAATAGGA
GTGAAACATCTACGTCTGATAACACAGAAACTTATCAAGAGAATACAAGCTCTTCTGGGCATCCTACCTTTAAGTGTCCC
TTGTGTCAAGAATCAAATTTTACCAGGCAGCGTTTACTGGATCACTGTAACAGTAATCACTTATTTCAGATAGTTCCTGT
GACGTGTCCTATTTGTGTGTCTCTTCCTTGGGGAGATCCTAGCCAGATTACTAGAAATTTCGTTAGTCATCTAAATCAGA
GACATCAGTTTGATTATGGAGAATTTGTGAATCTTCAGCTAGATGAGGAAACCCAATATCAAACTGCTGTTGAGGAATCT
TTTCAAGTAAACATC

Library Parental gene expression (RPM)
SRP017611_liver 3 .54 RPM
SRP017611_kidney 4 .43 RPM
SRP017611_brain 7 .35 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020160 ortholog_one2one 1 retrogene
retro_btau_322,
Choloepus hoffmanni ENSCHOG00000012689 ortholog_one2one 6 retrogenes
retro_chof_1043, retro_chof_1242, retro_chof_1931, retro_chof_418, retro_chof_714, retro_chof_793,
Callithrix jacchus ENSCJAG00000020875 ortholog_one2one 1 retrogene
retro_cjac_2325,
Homo sapiens ENSG00000134758 ortholog_one2one 1 retrogene
retro_hsap_3319,
Gorilla gorilla ENSGGOG00000027857 ortholog_one2one 1 retrogene
retro_ggor_1302,
Loxodonta africana ENSLAFG00000003811 ortholog_one2one 1 retrogene
retro_lafr_408,
Monodelphis domestica ENSMODG00000010850 ortholog_one2many 4 retrogenes
retro_mdom_1468, retro_mdom_387, retro_mdom_708, retro_mdom_725,
Mustela putorius furo ENSMPUG00000006982 ortholog_one2one 1 retrogene
retro_mputfur_276,
Nomascus leucogenys ENSNLEG00000006401 ortholog_one2one 1 retrogene
retro_nleu_1665,
Pongo abelii ENSPPYG00000009094 ortholog_one2one 1 retrogene
retro_pabe_2734,
Pan troglodytes ENSPTRG00000009956 ortholog_one2one 1 retrogene
retro_ptro_2155,
Pteropus vampyrus ENSPVAG00000003778 ortholog_one2one 2 retrogenes
retro_pvam_1316, retro_pvam_1379,
Rattus norvegicus ENSRNOG00000015645 ortholog_one2one 3 retrogenes
retro_rnor_2316, retro_rnor_808, retro_rnor_965,
Ictidomys tridecemlineatus ENSSTOG00000002293 ortholog_one2one 2 retrogenes
retro_itri_1443, retro_itri_576,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_379 51.56 51.02
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2. retro_fcat_1383 78.44 87.76
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Download FASTA sequences of all ENSFCAG00000014180 retrocopies