RetrogeneDB ID: | retro_rnor_2316 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:110791142..110791512(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rnf138 | ||
Ensembl ID: | ENSRNOG00000015645 | ||
Aliases: | None | ||
Description: | E3 ubiquitin-protein ligase RNF138 [Source:RefSeq peptide;Acc:NP_446040] |
Percent Identity: | 73.6 % |
Parental protein coverage: | 71.68 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LRRMGGTCSCCCIKIKFYRMRHHYKSCKKYQDEYGVSSVIPNVKISQDSVRSSNRSETSASDNTETYQED |
.RR..G.C.CC..KIKFYR.R..Y.S.K.YQDEY.VSS.IPN.KIS.DSV.SSNRSETS.SDNTETYQED | |
Retrocopy | MRRVSGSCRCCSKKIKFYRIRQNYRSFK*YQDEYSVSSGIPNFKISHDSVKSSNRSETSVSDNTETYQED |
Parental | TSSSGH-PTFKCPLCQESNFTRQRLLDHCNSNHLFQIVPVNLQLDEETQYQTAVE |
TSSSGH.P....P....S.FTRQ.LLDHCNSNHLFQ.VPVNLQLDEE..YQTAVE | |
Retrocopy | TSSSGH>PPSSIPYVKTS-FTRQCLLDHCNSNHLFQRVPVNLQLDEEIRYQTAVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 13 .23 RPM |
SRP017611_kidney | 0 .07 RPM | 9 .77 RPM |
SRP017611_liver | 0 .07 RPM | 5 .92 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000020160 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012689 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000020875 | 1 retrocopy | |
Felis catus | ENSFCAG00000014180 | 2 retrocopies | |
Homo sapiens | ENSG00000134758 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000027857 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000003811 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000010850 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000006982 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006401 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000009094 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000009956 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000003778 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000015645 | 3 retrocopies |
retro_rnor_2316 , retro_rnor_808, retro_rnor_965,
|
Ictidomys tridecemlineatus | ENSSTOG00000002293 | 2 retrocopies |