RetrogeneDB ID: | retro_mputfur_276 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896901.1:7051812..7052212(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF138 | ||
Ensembl ID: | ENSMPUG00000006982 | ||
Aliases: | None | ||
Description: | ring finger protein 138, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:17765] |
Percent Identity: | 51.82 % |
Parental protein coverage: | 54.69 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | VCQEVLKTPVRTAACQHVFCR-KCFLTAMRESGIHCPLCRGNVTRRERACPERALDLENIMRKFSGSCRC |
.C..VL.T...T...QH..C..K...T.MRES.I.C..C..N.TRRE..C.E.....EN..R.FS.SC.. | |
Retrocopy | LCPQVLET-LQTVTWQHFSCN>KMCPTEMRESEINCHFCHKNMTRREKSCLE*TSHIENVTREFSTSCGS |
Parental | CA-KQIKFYRMRHHYKSCKKYQDEYGVSSIIPNFQISQDSVGN-SNRSETSTSDNTETYQENTSSSG |
C..KQIKF.R.R.HYKS.KK.QD.Y...SIIP..QISQ.S.GN..N.SE.ST.D..E....NT.SSG | |
Retrocopy | CK<KQIKF*RQRYHYKSYKKDQDGYSAASIIPTSQISQGSAGN>LNKSEASTADSMENSEGNTPSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000020160 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012689 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000020875 | 1 retrocopy | |
Felis catus | ENSFCAG00000014180 | 2 retrocopies | |
Homo sapiens | ENSG00000134758 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000027857 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000003811 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000010850 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000006982 | 1 retrocopy |
retro_mputfur_276 ,
|
Nomascus leucogenys | ENSNLEG00000006401 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000009094 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000009956 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000003778 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000015645 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000002293 | 2 retrocopies |