RetrogeneDB ID: | retro_chof_1931 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_4257:29539..29952(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF138 | ||
Ensembl ID: | ENSCHOG00000012689 | ||
Aliases: | None | ||
Description: | ring finger protein 138, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:17765] |
Percent Identity: | 81.29 % |
Parental protein coverage: | 66.5 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | KYQEE-GVYSVIPNFQISQDSVGISNRSETSTSDNTETYQENTSSGHP-TFKCPLCQESNFTRQRLLDHC |
KYQ.E.GV.S.IPN.Q.SQDSV..SNRSETSTSDN.ET..E.TSSGHP.TFKCPL..ES.FTRQRL.DHC | |
Retrocopy | KYQDEYGVSSIIPNIQLSQDSVSNSNRSETSTSDNKET*GEKTSSGHP<TFKCPLGRESHFTRQRLMDHC |
Parental | NSNHLFQIVPVTCPICVSLPWGDPSQITRNFVSHLNQRHQFDYGEFVDLQLDEETQYQTAVEESFQVNI |
NSNHLFQIVPV.C.ICVSLP.G.PSQITRN..SHLNQRHQFDYGEFV.LQLDEET.YQTAV.ESFQVNI | |
Retrocopy | NSNHLFQIVPVICCICVSLP*GGPSQITRNSISHLNQRHQFDYGEFVNLQLDEETHYQTAVGESFQVNI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000020160 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012689 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000020875 | 1 retrocopy | |
Felis catus | ENSFCAG00000014180 | 2 retrocopies | |
Homo sapiens | ENSG00000134758 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000027857 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000003811 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000010850 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000006982 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006401 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000009094 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000009956 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000003778 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000015645 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000002293 | 2 retrocopies |