Parental gene:

MATR3, ENSG00000015479

Aliases:MATR3, MPD2, VCPDM
Description:matrin 3 [Source:HGNC Symbol;Acc:6912]
Organism:Human (Homo sapiens)
Coordinates:5:138609440..138667360(+)


>ENSG00000015479
ATGTCCAAGTCATTCCAGCAGTCATCTCTCAGTAGGGACTCACAGGGTCATGGGCGTGACCTGTCTGCGGCAGGAATAGG
CCTTCTTGCTGCTGCTACCCAGTCTTTAAGTATGCCAGCATCTCTTGGAAGGATGAACCAGGGTACTGCACGCCTTGCTA
GTTTAATGAATCTTGGAATGAGTTCTTCATTGAATCAACAAGGAGCTCATAGTGCACTGTCTTCTGCTAGTACTTCTTCC
CATAATTTGCAGTCTATATTTAACATTGGAAGTAGAGGTCCACTCCCTTTATCTTCTCAACACCGTGGAGATGCAGACCA
GGCCAGTAACATTTTGGCCAGCTTTGGTCTGTCTGCTAGAGACTTAGATGAACTGAGTCGTTATCCAGAGGACAAGATTA
CTCCTGAGAATTTGCCCCAAATCCTTCTACAGCTTAAAAGGAGGAGAACTGAAGAAGGCCCTACCTTGAGTTATGGTAGA
GATGGCAGATCTGCTACACGGGAGCCACCATACAGAGTACCTAGGGATGATTGGGAAGAAAAAAGGCACTTTAGAAGAGA
TAGTTTTGATGATCGTGGTCCTAGTCTCAACCCAGTGCTTGATTATGACCATGGAAGTCGTTCTCAAGAATCTGGTTATT
ATGACAGAATGGATTATGAAGATGACAGATTAAGAGATGGAGAAAGGTGTAGGGATGATTCTTTTTTTGGTGAGACCTCG
CATAACTATCATAAATTTGACAGTGAGTATGAGAGAATGGGACGTGGTCCTGGCCCCTTACAAGAGAGATCTCTCTTTGA
GAAAAAGAGAGGCGCTCCTCCAAGTAGCAATATTGAAGACTTCCATGGACTCTTACCGAAGGGTTATCCCCATCTGTGCT
CTATATGTGATTTGCCAGTTCATTCTAATAAGGAGTGGAGTCAACATATCAATGGAGCAAGTCACAGTCGTCGATGCCAG
CTTCTTCTTGAAATCTACCCAGAATGGAATCCTGACAATGATACAGGACACACAATGGGTGATCCATTCATGTTGCAGCA
GTCTACAAATCCAGCACCAGGAATTCTGGGACCTCCACCTCCCTCATTTCATCTTGGGGGACCAGCAGTTGGACCAAGAG
GAAATCTGGGTGCTGGAAATGGAAACCTGCAAGGACCTAGACACATGCAGAAAGGCAGAGTGGAAACTAGCAGAGTTGTT
CACATCATGGATTTTCAACGAGGGAAAAACTTGAGATACCAGCTATTACAGCTGGTAGAACCATTTGGAGTCATTTCAAA
TCATCTGATTCTAAATAAAATTAATGAGGCATTTATTGAAATGGCAACCACAGAGGATGCTCAGGCCGCAGTGGATTATT
ACACAACCACACCAGCGTTAGTATTTGGCAAGCCAGTGAGAGTTCATTTATCCCAGAAGTATAAAAGAATAAAGAAACCT
GAAGGAAAGCCAGATCAGAAGTTTGATCAAAAGCAAGAGCTTGGACGTGTGATACATCTCAGCAATTTGCCGCATTCTGG
CTATTCTGATAGTGCTGTTCTCAAGCTTGCTGAGCCTTATGGGAAAATAAAGAATTACATATTGATGAGGATGAAAAGTC
AGGCTTTTATTGAGATGGAGACAAGAGAAGATGCAATGGCAATGGTTGACCATTGTTTGAAAAAAGCCCTTTGGTTTCAG
GGGAGATGTGTGAAGGTTGACCTGTCTGAGAAATATAAAAAACTGGTTCTGAGGATTCCAAACAGAGGCATTGATTTACT
GAAAAAAGATAAATCCCGAAAAAGATCTTACTCTCCAGATGGCAAAGAATCTCCAAGTGATAAGAAATCCAAAACTGATG
GTTCCCAGAAGACTGAGAGTTCAACCGAAGGTAAAGAACAAGAAGAGAAGTCCGGTGAAGATGGTGAGAAAGACACAAAG
GATGACCAGACAGAGCAGGAACCTAATATGCTTCTTGAATCTGAAGATGAGCTACTTGTAGATGAAGAAGAAGCAGCAGC
ACTGCTAGAAAGTGGCAGTTCAGTGGGAGACGAGACCGATCTTGCTAATTTAGGTGATGTGGCTTCTGATGGGAAAAAGG
AACCATCAGATAAAGCTGTGAAAAAAGATGGAAGTGCTTCAGCAGCAGCAAAGAAAAAGCTTAAAAAGGTGGACAAGATC
GAGGAACTTGATCAAGAAAACGAAGCAGCGTTGGAAAATGGAATTAAAAATGAGGAAAACACAGAACCAGGTGCTGAATC
TTCTGAGAACGCTGATGATCCCAACAAAGATACAAGTGAAAACGCAGATGGTCAAAGTGATGAGAACAAGGACGACTATA
CAATCCCAGATGAGTATAGAATTGGACCATATCAGCCCAATGTTCCTGTTGGTATAGACTATGTGATACCTAAAACAGGG
TTTTACTGTAAGCTGTGTTCACTCTTTTATACAAATGAAGAAGTTGCAAAGAATACTCATTGCAGCAGCCTTCCTCATTA
TCAGAAATTAAAGAAATTTCTGAATAAATTGGCAGAAGAACGCAGACAGAAGAAGGAAACTTAA

Library Parental gene expression (RPM)
bodymap2_liver 85 .89 RPM
bodymap2_lung 286 .78 RPM
bodymap2_breast 240 .31 RPM
bodymap2_adipose 250 .26 RPM
bodymap2_adrenal 346 .81 RPM
bodymap2_skeletal_muscle 267 .73 RPM
bodymap2_thyroid 534 .58 RPM
bodymap2_prostate 383 .61 RPM
bodymap2_colon 347 .81 RPM
bodymap2_testis 479 .92 RPM
bodymap2_brain 686 .49 RPM
bodymap2_heart 217 .05 RPM
bodymap2_white_blood_cells 403 .27 RPM
bodymap2_lymph_node 374 .19 RPM
bodymap2_ovary 587 .39 RPM
bodymap2_kidney 354 .61 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000006888 ortholog_one2one 1 retrogene
retro_cjac_3950,
Gorilla gorilla ENSGGOG00000007308 ortholog_one2one 2 retrogenes
retro_ggor_276, retro_ggor_421,
Nomascus leucogenys ENSNLEG00000009093 ortholog_one2one 1 retrogene
retro_nleu_1849,
Oryctolagus cuniculus ENSOCUG00000026311 ortholog_one2one 1 retrogene
retro_ocun_652,
Otolemur garnettii ENSOGAG00000010607 ortholog_one2one 1 retrogene
retro_ogar_3417,
Pongo abelii ENSPPYG00000015835 ortholog_one2one 2 retrogenes
retro_pabe_1722, retro_pabe_438,
Pan troglodytes ENSPTRG00000017294 ortholog_one2one 1 retrogene
retro_ptro_181,
Rattus norvegicus ENSRNOG00000019875 ortholog_one2one 2 retrogenes
retro_rnor_1124, retro_rnor_475,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_199 90.25 69.66
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Download FASTA sequences of all ENSG00000015479 retrocopies