Parental gene:

MATR3, ENSOCUG00000026311

Aliases:None
Description:matrin 3 (MATR3), mRNA [Source:RefSeq mRNA;Acc:NM_001205257]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:3:21558267..21585102(+)


>ENSOCUG00000026311
ATGTCCAAGTCATTCCAGCAGTCATCTCTCGGTAGGGACTCACAGGGTCATGGGCGTGACCTGTCTGCAGCAGGAATAGG
CCTTCTTGCTGCTGCTACCCAGTCTTTAAGTATGCCAGCATCTCTTGGAAGGATGAACCAGGGTACTGCACGCCTTGCTA
GTTTAATGAATCTTGGAATGAGTTCTTCATTGAATCAACAAGGAGCTCATAGTGCACTGTCTTCTGCTAGTACTTCTTCC
CATAATTTGCAGTCTATATTTAACATTGGAAGTAGAGGTCCACTCCCTTTGTCTTCTCAACACCGTGGAGATGCAGACCA
GGCCAGTAACATTTTGGCCAGCTTTGGTCTGTCTGCTAGAGACTTAGATGAACTGAGTCGTTATCCAGAGGACAAGATTA
CTCCTGAGAATTTGCCCCAGATCCTTCTACAGCTTAAAAGGAGGAGAACTGAAGAAGGCCCTACATTGAGTTATGGTAGA
GATGGCAGATCTGCTACACGGGAGCCACCATACAGAGTACCTAGGGATGATTGGGAAGAAAAAAGGCACTTTAGAAGAGA
TAGTTTTGATGATCGTGGTCCTAGTCTCAACCCAGTGCTTGATTATGACCATGGAAGTCGTTCTCAAGAATCTGGTTATT
ATGACAGAATGGATTATGAAGATGACAGATTAAGAGATGGAGAAAGGTGTAGGGATGATTCTTTTTTTGGTGAGACCTCG
CATAACTATCATAAATTTGACAGTGAGTATGAGAGAATGGGACGTGGTCCTGGTCCCTTACAAGAGAGATCTCTCTTTGA
GAAAAAGAGGGGCGCTCCTCCAAGTAGCAATATTGAAGACTTCCATGGACTCTTACCGAAGGGTTATCCCCATCTGTGCT
CTATATGTGATTTGCCAGTTCATTCTAATAAGGAGTGGAGTCAACATATCAATGGAGCAAGTCACAGTCGTCGATGCCAG
CTTCTTCTTGAAATCTATCCAGAATGGAATCCTGACAATGATACAGGACACACAATGGGTGATCCATTCATGTTGCAGCA
GTCTACAAATCCAGCACCAGGAATTCTGGGACCTCCACCTCCCTCATTTCATCTTGGGGGACCAGCAGTTGGCCCAAGAG
GAAATCTGGGTGCTGGAAATGGGAATCTGCAAGGACCAAGACACATGCAGAAAGGCAGAGTGGAAACAAGCCGAGTTGTT
CACATCATGGATTTTCAACGAGGGAAAAACTTGAGATACCAACTGCTACAGCTGGTGGAACCATTTGGAGTCATTTCAAA
TCATCTGATTCTAAATAAAATTAATGAGGCATTTATTGAAATGGCAACCACAGAAGATGCTCAGGCTGCAGTGGATTATT
ATACAACCACACCAGCATTAGTATTTGGCAAGCCAGTTAGAGTTCATTTGTCCCAGAAGTATAAAAGAATAAAGAAACCT
GAGGGAAAGCCGGATCAGAAATTTGACCAAAAGCAAGAGCTTGGACGTGTGATACATCTCAGCAATTTGCCCCATTCTGG
CTATTCTGATAGTGCTGTGCTCAAACTTGCTGAACCTTATGGGAAAATAAAGAATTACATACTGATGAGGATGAAAAGCC
AGGCCTTTATAGAGATGGAAACCAGAGAAGATGCAATGGCAATGGTTGACCATTGTTTGAAAAAGGCACTTTGGTTCCAA
GGGAGGTGTGTGAAGGTTGACCTGTCTGAGAAATATAAAAAACTGGTACTGAGGATTCCCAACAGAGGCATTGACTTACT
GAAAAAGGATAAGTCCCGAAAAAGATCTTACTCTCCAGATGGCAAAGAATCTCCAAGTGATAAGAAATCCAAAACCGATG
GCTCCCAGAAGACTGAAAGTACAACTGAAGGTAAAGAACAAGAAGAGAAATCAGGTGAAGATGGTGAGAAAGATACAAAG
GATGACCAGACAGAACAAGAACCTAATATGCTTCTTGAATCTGAAGATGAACTACTTGTAGATGAAGAAGAAGCAGCAGC
ACTACTAGAAAGTGGCAGTTCAGTGGGAGATGAGACCGATCTTGCTAACTTAGGTGATGTTGCTTCTGATGGGAAAAAGG
AACCTTCAGACAAAGCTGTGAAAAAAGATACAAGTGCTTCAACTGCAGCAAAGAAAAAGCTTAAAAAGGTGGACAAGATC
GAGGAACTTGATCAAGAAAATGAAGCAGCGTTGGAAAATGGAATTAAAAATGAGGAAAATGCAGAACCAGGTGCTGAATC
TGCTGAGAATGCTGACGATCCCAGCAAAGACACAAGTGAAAATGCAGATGGCCAAAGCGATGAGAACAAGGAGGACTATA
CAATCCCAGATGAGTATAGAATTGGACCATATCAGCCCAATGTTCCTGTTGGTATAGACTATGTGATACCTAAAACAGGG
TTTTACTGTAAGCTGTGTTCACTCTTTTATACAAATGAAGAAGTTGCAAAGAATACTCATTGCAGCAGCCTTCCTCATTA
TCAGAAATTAAAGAAATTTCTGAATAAATTGGCAGAAGAACGCCGGCAAAAGAAGGAAGCTTAA

Library Parental gene expression (RPM)
SRP017611_brain 991 .40 RPM
SRP017611_kidney 261 .70 RPM
SRP017611_liver 110 .99 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000006888 ortholog_one2one 1 retrogene
retro_cjac_3950,
Homo sapiens ENSG00000015479 ortholog_one2one 1 retrogene
retro_hsap_199,
Gorilla gorilla ENSGGOG00000007308 ortholog_one2one 2 retrogenes
retro_ggor_276, retro_ggor_421,
Nomascus leucogenys ENSNLEG00000009093 ortholog_one2one 1 retrogene
retro_nleu_1849,
Otolemur garnettii ENSOGAG00000010607 ortholog_one2one 1 retrogene
retro_ogar_3417,
Pongo abelii ENSPPYG00000015835 ortholog_one2one 2 retrogenes
retro_pabe_1722, retro_pabe_438,
Pan troglodytes ENSPTRG00000017294 ortholog_one2one 1 retrogene
retro_ptro_181,
Rattus norvegicus ENSRNOG00000019875 ortholog_one2one 2 retrogenes
retro_rnor_1124, retro_rnor_475,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_652 93.81 51.36
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Download FASTA sequences of all ENSOCUG00000026311 retrocopies