Parental gene:

DKFZP459A162, ENSPPYG00000015835

Aliases:None
Description:None
Organism:Orangutan (Pongo abelii)
Coordinates:5:140845247..140883347(+)


>ENSPPYG00000015835
ATGTCCAAGTCATTCCAGCAGTCATCTCTCAGTAGGGACTCACAGGGTCATGGGCGTGACCTGTCTGCGGCAGGAATAGG
CCTTCTTGCTGCTGCTACCCAGTCTTTAAGTATGCCAGCATCTCTTGGAAGGATGAACCAGGGTACTGCACGCCTTGCTA
GTTTAATGAATCTTGGAATGAGTTCTTCATTGAATCAACAAGGAGCTCATAGTGCACTGTCTTCTGCTAGTACTTCTTCC
CATAATTTGCAGTCTATATTTAACATTGGAAGTAGAGGTCCACTCCCTTTATCTTCTCAACACCGTGGAGATGCAGACCA
GGCCAGTAACATTTTGGCCAGCTTTGGTCTGTCTGCTAGAGACTTAGATGAACTGAGTCGTTATCCAGAGGACAAGATTA
CTCCTGAGAATTTGCCCCAAATCCTTCTACAGCTTAAAAGGAGGAGAACTGAAGAAGGCCCTACCTTGAGTTATGGTAGA
GATGGCAGATCTGCTACACGGGAGCCACCATACAGAGTACCTAGGGATGATTGGGAAGAAAAAAGGCACTTTAGAAGAGA
TAGTTTTGATGATCGTGGTCCTAGTCTCAACCCAGTGCTTGATTATGACCATGGAAGTCGTTCTCAAGAATCTGGTTATT
ATGACAGAATGGATTATGAAGATGACAGATTAAGAGATGGAGAAAGGTGTAGGGATGATTCTTTTTTTGGTGAGACCTCG
CATAACTATCATAAATTTGACAGTGAGTATGAGAGAATGGGACGTGGTCCTGGCCCCTTACAAGAGAGATCTCTCTTTGA
GAAAAAGAGAGGCGCTCCTCCAAGTAGCAATATTGAAGACTTCCATGGACTCTTACCGAAGGGTTATCCCCATCTGTGCT
CTATATGTGATTTGCCAGTTCATTCTAATAAGGAGTGGAGTCAACATATCAATGGAGCAAGTCACAGTCGTCGATGCCAG
CTTCTTCTTGAAATCTACCCAGAATGGAATCCTGACAATGATACAGGACACACAATGGGTGATCCATTCATGTTGCAGCA
GTCTACAAATCCAGCACCAGGAATTCTGGGACCTCCACCTCCCTCGTTTCATCTTGGGGGACCAGCAGTTGGACCAAGAG
GAAATCTGGGTGCTGGAAATGGAAACCTGCAAGGACCTAGACACATGCAGAAAGGCAGAGTGGAAACTAGCAGAGTTGTT
CACATCATGGATTTTCAACGAGGGAAAAACTTGAGATACCAGCTATTACAGCTGGTAGAACCATTTGGAGTCATTTCAAA
TCATCTGATTCTAAATAAAATTAATGAGGCATTTATTGAAATGGCAACCACAGAGGATGCTCAGGCTGCAGTGGATTATT
ACACAACCACACCAGCATTAGTATTTGGCAAGCCAGTGAGAGTTCATTTATCCCAGAAGTATAAAAGAATAAAGAAACCT
GAAGGAAAGCCAGATCAGAAGTTTGATCAAAAGCAAGAGCTTGGACGTGTGATACATCTCAGCAATTTGCCCCATTCTGG
CTATTCTGATAGTGCTGTTCTCAAGCTTGCTGAGCCTTATGGGAAGATAAAGAATTACATATTGATGAGGATGAAAAGTC
AGGCTTTTATTGAGATGGAGACAAGAGAAGATGCAATGGCCATGGTTGACCATTGTTTGAAAAAAGCCCTTTGGTTTCAG
GGGAGATGTGTGAAGGTTGACCTGTCTGAGAAATATAAAAAACTGGTTCTGAGGATTCCAAACAGAGGCATTGATTTACT
GAAAAAAGATAAATCCCGAAAAAGATCTTACTCTCCAGATGGCAAAGAATCTCCAAGTGATAAGAAATCCAAAACTGATG
GTTCCCAGAAGACTGAAAGTTCAACCGAAGGTAAAGAACAAGAAGAGAAGTCCGGTGAAGATGGTGAGAAAGACACAAAG
GATGACCAGACAGAGCAGGAACCTAATATGCTTCTTGAATCTGAAGATGAGCTACTTGTAGATGAAGAAGAAGCAGCAGC
ACTGCTAGAAAGTGGCAGTTCAGTGGGAGACGAGACCGATCTTGCTAATTTAGGTGATGTGGCTTCTGATGGGAAAAAGG
AACCTTCAGATAAAGCTGTGAAAAAAGATGCAAGTGCTTCAGCAGCAGCAAAGAAAAAGCTTAAAAAGCGTCGTTTTCCA
GGGAGTATGGAAGGTTTTGTCACTCTAGATGAGGTTGGTGATGAGGAAGATTCGGAACTTCAGAAACTTCGTAAATCGGG
CATGGCATTTAAATCTGGTGACAAAAATGATGATGGTTTGGTTGAAATTAAGGTGGACAAGATCGAGGAACTTGATCAAG
AGAACGAAGCAGCGTTGGAAAATGGAATTAAAAATGAGGAAAACACAGAACCAGGTGCTGAATCTGCTGAGAACGCTGAT
GATCCGAACAAAGATACAAGTGAAAACGCAGATGGTCAAAGTGATGAGAACAAGGAGGACTATACAATCCCAGATGAGTA
TAGAATTGGACCATATCAGCCCAATGTACCTGTTGGTATAGACTATGTGATACCTAAAACAGGGTTTTACTGTAAGCTGT
GTTCACTCTTTTATACAAATGAAGAAGTTGCAAAGAATACTCATTGCAGCAGCCTTCCTCATTATCAGAAATTAAAGAAA
TTTCTGAATAAATTGGCAGAAGAACGCAGACAGAAGAAGGAAACTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 296 .36 RPM
SRP007412_cerebellum 493 .94 RPM
SRP007412_heart 124 .42 RPM
SRP007412_kidney 130 .86 RPM
SRP007412_liver 88 .41 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000006888 ortholog_one2one 1 retrogene
retro_cjac_3950,
Homo sapiens ENSG00000015479 ortholog_one2one 1 retrogene
retro_hsap_199,
Gorilla gorilla ENSGGOG00000007308 ortholog_one2one 2 retrogenes
retro_ggor_276, retro_ggor_421,
Nomascus leucogenys ENSNLEG00000009093 ortholog_one2one 1 retrogene
retro_nleu_1849,
Oryctolagus cuniculus ENSOCUG00000026311 ortholog_one2one 1 retrogene
retro_ocun_652,
Otolemur garnettii ENSOGAG00000010607 ortholog_one2one 1 retrogene
retro_ogar_3417,
Pan troglodytes ENSPTRG00000017294 ortholog_one2one 1 retrogene
retro_ptro_181,
Rattus norvegicus ENSRNOG00000019875 ortholog_one2one 2 retrogenes
retro_rnor_1124, retro_rnor_475,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_438 90.39 65.92
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2. retro_pabe_1722 89.94 53.85
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Download FASTA sequences of all ENSPPYG00000015835 retrocopies