Parental gene: | PSMC1, ENSG00000100764 |
| Aliases: | PSMC1, P26S4, S4, p56 |
| Description: | proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Source:HGNC Symbol;Acc:9547] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 14:90722838..90738968(+) |
>ENSG00000100764
ATGGGTCAAAGTCAGAGTGGTGGTCATGGTCCTGGAGGTGGCAAGAAGGATGACAAGGACAAGAAAAAGAAATATGAACC
TCCTGTACCAACTAGAGTGGGGAAAAAGAAGAAGAAAACAAAGGGACCAGATGCTGCCAGCAAACTGCCACTGGTGACAC
CTCACACTCAGTGCCGGTTAAAATTACTGAAGTTAGAGAGAATTAAAGACTATCTTCTCATGGAGGAAGAATTCATTAGA
AATCAGGAACAAATGAAACCATTAGAAGAAAAGCAAGAGGAGGAAAGATCAAAAGTGGATGATCTGAGGGGGACCCCGAT
GTCAGTAGGAACCTTGGAAGAGATCATTGATGACAATCATGCCATCGTGTCTACATCTGTGGGCTCAGAACACTACGTCA
GCATTCTTTCATTTGTAGACAAGGATCTGCTGGAACCTGGCTGCTCGGTCCTGCTCAACCACAAGGTGCATGCCGTGATA
GGGGTGCTGATGGATGACACGGATCCCCTGGTCACAGTGATGAAGGTAGAAAAGGCCCCCCAGGAGACCTATGCAGATAT
TGGGGGGTTGGACAACCAAATTCAGGAAATTAAGGAATCTGTGGAGCTTCCTCTCACCCATCCTGAATATTATGAAGAGA
TGGGTATAAAGCCTCCTAAGGGGGTCATTCTCTATGGTCCACCTGGCACAGGTAAAACCTTGTTAGCCAAAGCAGTAGCA
AACCAAACCTCAGCCACTTTCTTGAGAGTGGTTGGCTCTGAACTTATTCAGAAGTACCTAGGTGATGGGCCCAAACTCGT
ACGGGAATTGTTCCGAGTTGCTGAAGAACATGCACCGTCCATCGTGTTTATTGATGAAATTGACGCCATTGGGACAAAAA
GATATGACTCCAATTCTGGTGGTGAGAGAGAAATTCAGCGAACAATGTTGGAACTGCTGAACCAGTTGGATGGATTTGAT
TCTAGGGGAGATGTGAAAGTTATCATGGCCACAAACCGAATAGAAACTTTGGATCCAGCACTTATCAGACCAGGCCGCAT
TGACAGGAAGATTGAGTTCCCCCTGCCTGATGAAAAGACGAAGAAGCGCATCTTTCAGATTCACACAAGCAGGATGACGC
TGGCTGATGATGTAACCCTGGACGACCTGATCATGGCTAAAGATGACCTCTCTGGTGCTGACATCAAGGCAATCTGTACA
GAAGCTGGTCTGATGGCCTTAAGAGAACGTAGAATGAAAGTAACAAATGAAGACTTCAAAAAATCTAAAGAAAATGTTCT
TTATAAGAAACAGGAAGGCACCCCTGAGGGGCTGTATCTCTAA
ATGGGTCAAAGTCAGAGTGGTGGTCATGGTCCTGGAGGTGGCAAGAAGGATGACAAGGACAAGAAAAAGAAATATGAACC
TCCTGTACCAACTAGAGTGGGGAAAAAGAAGAAGAAAACAAAGGGACCAGATGCTGCCAGCAAACTGCCACTGGTGACAC
CTCACACTCAGTGCCGGTTAAAATTACTGAAGTTAGAGAGAATTAAAGACTATCTTCTCATGGAGGAAGAATTCATTAGA
AATCAGGAACAAATGAAACCATTAGAAGAAAAGCAAGAGGAGGAAAGATCAAAAGTGGATGATCTGAGGGGGACCCCGAT
GTCAGTAGGAACCTTGGAAGAGATCATTGATGACAATCATGCCATCGTGTCTACATCTGTGGGCTCAGAACACTACGTCA
GCATTCTTTCATTTGTAGACAAGGATCTGCTGGAACCTGGCTGCTCGGTCCTGCTCAACCACAAGGTGCATGCCGTGATA
GGGGTGCTGATGGATGACACGGATCCCCTGGTCACAGTGATGAAGGTAGAAAAGGCCCCCCAGGAGACCTATGCAGATAT
TGGGGGGTTGGACAACCAAATTCAGGAAATTAAGGAATCTGTGGAGCTTCCTCTCACCCATCCTGAATATTATGAAGAGA
TGGGTATAAAGCCTCCTAAGGGGGTCATTCTCTATGGTCCACCTGGCACAGGTAAAACCTTGTTAGCCAAAGCAGTAGCA
AACCAAACCTCAGCCACTTTCTTGAGAGTGGTTGGCTCTGAACTTATTCAGAAGTACCTAGGTGATGGGCCCAAACTCGT
ACGGGAATTGTTCCGAGTTGCTGAAGAACATGCACCGTCCATCGTGTTTATTGATGAAATTGACGCCATTGGGACAAAAA
GATATGACTCCAATTCTGGTGGTGAGAGAGAAATTCAGCGAACAATGTTGGAACTGCTGAACCAGTTGGATGGATTTGAT
TCTAGGGGAGATGTGAAAGTTATCATGGCCACAAACCGAATAGAAACTTTGGATCCAGCACTTATCAGACCAGGCCGCAT
TGACAGGAAGATTGAGTTCCCCCTGCCTGATGAAAAGACGAAGAAGCGCATCTTTCAGATTCACACAAGCAGGATGACGC
TGGCTGATGATGTAACCCTGGACGACCTGATCATGGCTAAAGATGACCTCTCTGGTGCTGACATCAAGGCAATCTGTACA
GAAGCTGGTCTGATGGCCTTAAGAGAACGTAGAATGAAAGTAACAAATGAAGACTTCAAAAAATCTAAAGAAAATGTTCT
TTATAAGAAACAGGAAGGCACCCCTGAGGGGCTGTATCTCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 23 .28 RPM |
| bodymap2_lung | 20 .43 RPM |
| bodymap2_breast | 31 .85 RPM |
| bodymap2_adipose | 37 .95 RPM |
| bodymap2_adrenal | 37 .52 RPM |
| bodymap2_skeletal_muscle | 61 .89 RPM |
| bodymap2_thyroid | 58 .19 RPM |
| bodymap2_prostate | 28 .53 RPM |
| bodymap2_colon | 23 .22 RPM |
| bodymap2_testis | 32 .69 RPM |
| bodymap2_brain | 26 .25 RPM |
| bodymap2_heart | 33 .49 RPM |
| bodymap2_white_blood_cells | 23 .72 RPM |
| bodymap2_lymph_node | 18 .07 RPM |
| bodymap2_ovary | 35 .16 RPM |
| bodymap2_kidney | 24 .42 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000017510 | possible_ortholog | 2 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000013595 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000017701 | ortholog_one2one | 7 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000006458 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000010620 | ortholog_one2one | 8 retrogenes | |
| Macropus eugenii | ENSMEUG00000001526 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000016733 | ortholog_one2one | 7 retrogenes | |
| Macaca mulatta | ENSMMUG00000022990 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017013 | ortholog_one2one | 10 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000006231 | possible_ortholog | 4 retrogenes | |
| Otolemur garnettii | ENSOGAG00000032343 | ortholog_one2many | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000025948 | ortholog_one2many | 9 retrogenes | |
| Pan troglodytes | ENSPTRG00000006623 | ortholog_one2one | 9 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_975 | 92.38 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_1090 | 80.91 | 98.41 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_1278 | 68.61 | 61.59 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_hsap_2080 | 88.74 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_hsap_2658 | 99.77 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_hsap_2810 | 73.21 | 97.73 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_hsap_2873 | 78.40 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_hsap_3323 | 86.00 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_hsap_3416 | 88.66 | 99.77 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_hsap_3793 | 88.46 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000100764 retrocopies