Parental gene:

PSMC1, ENSCAFG00000017510

Aliases:None
Description:Canis lupus familiaris proteasome (prosome, macropain) 26S subunit, ATPase, 1 (PSMC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001251951]
Organism:Dog (Canis familiaris)
Coordinates:8:61272362..61285886(+)


>ENSCAFG00000017510
ATGGGTCAAAGTCAGAGTGGTGGTCATGGCCCTGGAGGTGGCAAGAAGGATGACAAGGACAAGAAAAAGAAATATGAACC
TCCCGTACCAACCAGAGTGGGGAAAAAGAAGAAGAAAACAAAGGGACCAGATGCTGCGAGCAAGCTTCCACTGGTGACAC
CTCACACTCAATGCCGGTTAAAATTATTGAAGTTAGAGAGAATTAAAGACTATCTTCTCATGGAGGAAGAATTCATTAGA
AATCAGGAACAAATGAAGCCTTTAGAAGAAAAGCAAGAGGAGGAAAGATCTAAGGTGGATGATCTGAGGGGAACCCCAAT
GTCAGTAGGAACCTTGGAAGAGATCATTGATGACAATCATGCCATCGTGTCTACATCTGTGGGTTCAGAACACTATGTCA
GCATTCTTTCCTTTGTAGACAAGGATCTGCTGGAACCAGGCTGCTCTGTCCTGCTCAACCACAAGGTGCATGCTGTCATA
GGGGTGCTCATGGATGACACAGATCCCTTGGTCACAGTAATGAAGGTAGAGAAGGCCCCCCAGGAAACCTACGCTGATAT
CGGGGGATTGGACAACCAAATCCAGGAAATTAAGGAATCCGTGGAGCTTCCTCTCACTCATCCTGAATATTATGAAGAGA
TGGGTATAAAGCCCCCAAAGGGTGTCATTCTCTATGGTCCACCTGGCACAGGTAAAACCTTATTAGCCAAAGCAGTAGCA
AACCAAACCTCAGCCACTTTCTTGAGAGTGGTTGGCTCTGAACTTATTCAGAAGTACCTAGGCGACGGGCCCAAACTCGT
TCGGGAATTGTTCCGAGTTGCGGAAGAACATGCACCATCCATCGTGTTTATTGATGAAATCGATGCCATTGGAACAAAAA
GATACGACTCAAATTCTGGTGGGGAGAGGGAAATTCAACGAACGATGTTGGAACTGTTGAACCAGTTGGATGGATTTGAT
TCAAGGGGTGATGTGAAGGTCATCATGGCCACAAACCGGATAGAAACCTTGGATCCAGCACTTATCAGACCAGGCCGCAT
TGACAGGAAGATTGAGTTCCCCCTGCCTGACGAAAAGACTAAGAAGCGCATCTTTCAGATCCACACAAGCAGGATGACGC
TGGCTGATGATGTGACCCTGGACGACTTGATCATGGCTAAGGATGACCTCTCTGGTGCTGACATCAAGGCCATCTGCACA
GAGGCTGGTCTGATGGCCTTGAGAGAGCGTCGGATGAAAGTAACAAATGAAGACTTCAAGAAATCTAAAGAAAATGTTCT
TTATAAAAAACAAGAGGGCACCCCCGAGGGACTGTATCTCTAG

Library Parental gene expression (RPM)
SRP012049_cerebellum 60 .56 RPM
SRP017611_brain 50 .49 RPM
SRP017611_kidney 69 .67 RPM
SRP017611_liver 29 .95 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001839 ortholog_one2many 4 retrogenes
retro_amel_1536, retro_amel_1886, retro_amel_405, retro_amel_962,
Choloepus hoffmanni ENSCHOG00000013595 ortholog_one2many 1 retrogene
retro_chof_1954,
Callithrix jacchus ENSCJAG00000017701 possible_ortholog 7 retrogenes
retro_cjac_1152, retro_cjac_1537, retro_cjac_2417, retro_cjac_2433, retro_cjac_4219, retro_cjac_661, retro_cjac_678,
Cavia porcellus ENSCPOG00000002424 possible_ortholog 1 retrogene
retro_cpor_144,
Dasypus novemcinctus ENSDNOG00000006458 ortholog_one2many 1 retrogene
retro_dnov_2162,
Equus caballus ENSECAG00000003601 ortholog_one2many 1 retrogene
retro_ecab_355,
Echinops telfairi ENSETEG00000002661 ortholog_one2many 1 retrogene
retro_etel_580,
Felis catus ENSFCAG00000011310 ortholog_one2many 8 retrogenes
retro_fcat_1444, retro_fcat_1559, retro_fcat_2015, retro_fcat_344, retro_fcat_614, retro_fcat_691, retro_fcat_713, retro_fcat_924,
Homo sapiens ENSG00000100764 possible_ortholog 10 retrogenes
retro_hsap_1090, retro_hsap_1278, retro_hsap_2080, retro_hsap_2658, retro_hsap_2810, retro_hsap_2873, retro_hsap_3323, retro_hsap_3416, retro_hsap_3793, retro_hsap_975,
Gorilla gorilla ENSGGOG00000010620 possible_ortholog 8 retrogenes
retro_ggor_1004, retro_ggor_1298, retro_ggor_1629, retro_ggor_1954, retro_ggor_1993, retro_ggor_2309, retro_ggor_780, retro_ggor_858,
Macropus eugenii ENSMEUG00000001526 ortholog_one2many 1 retrogene
retro_meug_623,
Microcebus murinus ENSMICG00000016733 possible_ortholog 7 retrogenes
retro_mmur_1039, retro_mmur_1063, retro_mmur_1245, retro_mmur_1577, retro_mmur_216, retro_mmur_839, retro_mmur_983,
Myotis lucifugus ENSMLUG00000007471 ortholog_one2many 2 retrogenes
retro_mluc_2490, retro_mluc_508,
Macaca mulatta ENSMMUG00000022990 possible_ortholog 1 retrogene
retro_mmul_255,
Mustela putorius furo ENSMPUG00000008150 ortholog_one2many 4 retrogenes
retro_mputfur_1602, retro_mputfur_409, retro_mputfur_654, retro_mputfur_815,
Mus musculus ENSMUSG00000021178 ortholog_one2many 3 retrogenes
retro_mmus_1517, retro_mmus_1826, retro_mmus_812,
Nomascus leucogenys ENSNLEG00000017013 possible_ortholog 10 retrogenes
retro_nleu_1123, retro_nleu_1163, retro_nleu_1589, retro_nleu_1625, retro_nleu_1669, retro_nleu_2318, retro_nleu_2625, retro_nleu_429, retro_nleu_616, retro_nleu_706,
Oryctolagus cuniculus ENSOCUG00000006231 ortholog_one2many 4 retrogenes
retro_ocun_1135, retro_ocun_1212, retro_ocun_1654, retro_ocun_411,
Otolemur garnettii ENSOGAG00000032343 possible_ortholog 2 retrogenes
retro_ogar_3014, retro_ogar_367,
Pongo abelii ENSPPYG00000025948 possible_ortholog 9 retrogenes
retro_pabe_1059, retro_pabe_153, retro_pabe_2379, retro_pabe_2408, retro_pabe_2737, retro_pabe_2832, retro_pabe_3099, retro_pabe_825, retro_pabe_907,
Pan troglodytes ENSPTRG00000006623 possible_ortholog 9 retrogenes
retro_ptro_1530, retro_ptro_1904, retro_ptro_1944, retro_ptro_2153, retro_ptro_2321, retro_ptro_2573, retro_ptro_672, retro_ptro_742, retro_ptro_874,
Pteropus vampyrus ENSPVAG00000010020 ortholog_one2many 3 retrogenes
retro_pvam_1190, retro_pvam_350, retro_pvam_500,
Ictidomys tridecemlineatus ENSSTOG00000001655 possible_ortholog 1 retrogene
retro_itri_780,
Tursiops truncatus ENSTTRG00000013582 ortholog_one2many 1 retrogene
retro_ttru_239,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1238 78.15 53.18
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2. retro_cfam_1562 97.05 100.00
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Download FASTA sequences of all ENSCAFG00000017510 retrocopies