RetrogeneDB ID: | retro_ocun_1212 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 3:134938524..134939411(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000006231 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.99 % |
Parental protein coverage: | 68.64 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 9 |
Parental | GQSQSGGHGPGGGKKDDKDKKKKYEPPVPTRVGKKKKKTKGP-DAASKLPLVTPHTQCRLKLLKLERIKD |
GQ.QSGGH.P..GK...K.KKKK..PPVPTRVGK.KKKTKG..DAASKLPLVTPHTQ..LKLLKLE.... | |
Retrocopy | GQNQSGGHDPDSGK---KGKKKKHKPPVPTRVGKNKKKTKGQ>DAASKLPLVTPHTQ*WLKLLKLEN*R- |
Parental | YLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVD |
YLLMEEEFI.NQE.MKPLEEKQEEERS.VDDLRGTP.SVGTLE.II.DNHAI..T..G.E.Y.SILSF.D | |
Retrocopy | YLLMEEEFINNQE*MKPLEEKQEEERSRVDDLRGTPKSVGTLEKIINDNHAIMLTTLGLEYYISILSFMD |
Parental | KDLLEPG-CSVLLNHKVHA-VIG-VLMDDTDPLVTVMKVEKAPQE-TYADIGGLDNQIQEIKESVE-LPL |
KDLL.PG.CSVLLNHKVH..V.G.VLM.DTDPLVTVMK.EKAPQE.TYA.IGGLD.QIQE.K.SVE..PL | |
Retrocopy | KDLLVPG<CSVLLNHKVHM<VMG<VLMNDTDPLVTVMKMEKAPQE>TYAEIGGLDSQIQEMK*SVE<VPL |
Parental | THPEYYEEM-GIKPPKGV-ILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRV |
.HPEY..EM.GIKP.KGV.I..GP..TGK.LLA.AV.NQ..ATFLRVV.SELIQK..GD.PK...ELF.. | |
Retrocopy | RHPEYHKEM>GIKPCKGV>ICKGP--TGKPLLAEAVKNQALATFLRVVESELIQK*PGDVPKVIQELFHI |
Parental | AEEHAPSIVFIDEIDA-IGTKRYDSNSGGER |
A.E.A..I.FID..D...GTK.YDSNS.GER | |
Retrocopy | AKEYALPIMFIDDTDT<LGTKIYDSNSSGER |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 78 .97 RPM |
SRP017611_kidney | 0 .00 RPM | 76 .12 RPM |
SRP017611_liver | 0 .00 RPM | 54 .03 RPM |