Parental gene: | SMS, ENSG00000102172 |
| Aliases: | SMS, MRSR, SPMSY, SRS, SpS |
| Description: | spermine synthase [Source:HGNC Symbol;Acc:11123] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | X:21958690..22025798(+) |
>ENSG00000102172
ATGGCAGCAGCACGGCACAGCACGCTCGACTTCATGCTCGGCGCCAAAGCTGATGGTGAGACCATTCTAAAAGGCCTCCA
GTCCATTTTCCAGGAGCAGGGGATGGCGGAGTCGGTGCACACCTGGCAGGACCATGGCTATTTAGCAACCTACACAAACA
AGAACGGCAGCTTTGCCAATTTGAGAATTTACCCACATGGATTGGTGTTGCTGGACCTTCAGAGTTATGATGGTGATGCG
CAAGGCAAAGAAGAGATCGACAGTATTTTGAACAAAGTAGAGGAAAGAATGAAAGAATTGAGTCAGGACAGTACTGGGCG
GGTGAAACGATTACCACCCATAGTGCGAGGAGGAGCCATCGACAGATACTGGCCCACCGCCGACGGGCGCCTGGTTGAAT
ATGACATAGATGAAGTGGTATATGACGAAGATTCACCTTATCAAAATATAAAAATTCTACACTCGAAGCAGTTTGGAAAT
ATTCTCATCCTTAGTGGGGATGTTAATTTGGCAGAGAGTGATTTGGCATATACCCGGGCCATCATGGGCAGTGGCAAAGA
AGATTACACTGGCAAAGATGTACTCATTCTGGGAGGTGGAGACGGAGGCATATTGTGTGAAATAGTCAAACTAAAACCAA
AGATGGTCACTATGGTAGAGATTGACCAAATGGTGATTGATGGGTGTAAGAAATACATGCGAAAAACGTGTGGCGATGTC
TTAGACAATCTTAAAGGAGACTGCTATCAGGTTCTAATAGAAGACTGTATCCCGGTACTGAAGAGGTACGCCAAAGAAGG
GAGAGAATTTGATTATGTGATTAATGATTTGACAGCTGTTCCAATCTCCACGTCTCCAGAAGAAGATTCCACATGGGAGT
TTCTCAGACTGATTCTTGACCTCTCAATGAAAGTGTTGAAACAGGATGGGAAATATTTTACACAGGGGAACTGTGTCAAT
CTGACAGAAGCACTGTCGCTCTATGAAGAACAGCTGGGGCGCCTGTATTGTCCTGTGGAATTTTCAAAGGAGATCGTCTG
TGTCCCTTCATACTTGGAATTGTGGGTATTTTACACTGTTTGGAAGAAAGCTAAACCCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_adipose | 44 .17 RPM |
| bodymap2_adrenal | 35 .90 RPM |
| bodymap2_brain | 60 .12 RPM |
| bodymap2_breast | 49 .55 RPM |
| bodymap2_colon | 96 .64 RPM |
| bodymap2_heart | 24 .28 RPM |
| bodymap2_kidney | 89 .51 RPM |
| bodymap2_liver | 18 .59 RPM |
| bodymap2_lung | 68 .78 RPM |
| bodymap2_lymph_node | 39 .25 RPM |
| bodymap2_ovary | 85 .65 RPM |
| bodymap2_prostate | 99 .38 RPM |
| bodymap2_skeletal_muscle | 18 .12 RPM |
| bodymap2_testis | 98 .75 RPM |
| bodymap2_thyroid | 115 .28 RPM |
| bodymap2_white_blood_cells | 62 .80 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000013284 | possible_ortholog | 3 retrogenes | |
| Cavia porcellus | ENSCPOG00000006176 | ortholog_one2one | 2 retrogenes | |
| Echinops telfairi | ENSETEG00000010098 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000003123 | possible_ortholog | 3 retrogenes | |
| Myotis lucifugus | ENSMLUG00000013185 | possible_ortholog | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000020392 | ortholog_one2one | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000007897 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000071708 | ortholog_one2one | 6 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000009955 | ortholog_one2one | 4 retrogenes | |
| Pongo abelii | ENSPPYG00000020182 | ortholog_one2one | 4 retrogenes | |
| Rattus norvegicus | ENSRNOG00000007688 | ortholog_one2many | 2 retrogenes | |
| Tupaia belangeri | ENSTBEG00000012109 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_243 | 97.28 | 100.00 | Please wait, loading  |
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| 2. | retro_hsap_3168 | 85.32 | 90.55 | Please wait, loading |
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| 3. | retro_hsap_3193 | 80.20 | 53.83 | Please wait, loading |
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| 4. | retro_hsap_3611 | 94.26 | 100.00 | Please wait, loading |
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| 5. | retro_hsap_4826 | 82.47 | 68.03 | Please wait, loading |
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Download FASTA sequences of all ENSG00000102172 retrocopies