RetrogeneDB ID: | retro_nleu_1664 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397303.1:19759700..19760285(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SMS | ||
Ensembl ID: | ENSNLEG00000009955 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.95 % |
Parental protein coverage: | 53.28 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | ESDLAYTRAIMGSGKEDYTGKDVLILGGGDGGILCEIVKLKPKMVTMVEISFFLLSVLSKYMRKTCGDVL |
.SDLAYT.AIMGS.K.DYTGK.VLIL.G.DGGILCEIVKLK.KMVT.VEI.........KYM.KTCGDV. | |
Retrocopy | QSDLAYTWAIMGSSKADYTGKEVLILRG*DGGILCEIVKLKSKMVTVVEIDQMVIDGCKKYMQKTCGDVV |
Parental | DNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGK |
DNLKG.CYQ.LIEDCIP.LKR..KEGRE.D.V.N.LTAVPISTS.E.DSTWEFLRL..D..M.VLKQDGK | |
Retrocopy | DNLKGGCYQALIEDCIPILKRHTKEGRELDCVTNNLTAVPISTSLEQDSTWEFLRLTFDP*MNVLKQDGK |
Parental | YFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTVWKKAKP |
YFTQGNCVNLTEAL.LYEEQLG.LYC.VEFSKEIV.VPS..ELWVFY.VWKKAKP | |
Retrocopy | YFTQGNCVNLTEALPLYEEQLGCLYCLVEFSKEIVYVPSNFELWVFYAVWKKAKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000013284 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000033933 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000006176 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000010098 | 2 retrocopies | |
Homo sapiens | ENSG00000102172 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000003123 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000000192 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000013185 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000020392 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000007897 | 1 retrocopy | |
Mus musculus | ENSMUSG00000071708 | 6 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009955 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006016 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000020182 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000007688 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000012109 | 3 retrocopies |