RetrogeneDB ID: | retro_nleu_2755 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397420.1:189102..189904(+) | ||
Located in intron of: | ENSNLEG00000010407 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SMS | ||
Ensembl ID: | ENSNLEG00000009955 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.87 % |
Parental protein coverage: | 73.22 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | ELSQDSTGRVKRLPPIVRGGAIDRYWPTADGRLVEYDID-EVVYDEDSPYQNIKILHSKQFGNILILSGD |
ELSQDSTG.VKRLPPIVRGGAI.RYWP..DGRLVEYDID.EVV.DEDS.YQNIKILHSKQFGNILILSGD | |
Retrocopy | ELSQDSTGWVKRLPPIVRGGAINRYWPITDGRLVEYDID>EVVCDEDSSYQNIKILHSKQFGNILILSGD |
Parental | VNLAESDLAYTRAIMGSGKEDYTGKDVLILGGGDGGILCEIVKLKPKMVTMVEISFFLLSVLSKYMRKTC |
VNL.ESDL.YT.AIMGSGKEDYTGKDVLILG..DGGILCEIVKLK.KMVTMVE..........K.MRKTC | |
Retrocopy | VNLVESDLVYTWAIMGSGKEDYTGKDVLILGDRDGGILCEIVKLKAKMVTMVELDQMVINGC-KNMRKTC |
Parental | GDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLK |
GDVLDNLKGDC.QVLIEDCI.VLKRY.KEGR.F.Y.INDLTAVPIS.SPEE.STWEFLRLILDL.MKVLK | |
Retrocopy | GDVLDNLKGDCFQVLIEDCILVLKRYTKEGR*FYYMINDLTAVPISMSPEEVSTWEFLRLILDLLMKVLK |
Parental | QDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTVWKKAKP |
QDGKYFTQGNCVNLTEAL.L.EEQLGRLYCPVEFSKEIVCV.SYLELWVFYT..KKAKP | |
Retrocopy | QDGKYFTQGNCVNLTEALLLCEEQLGRLYCPVEFSKEIVCVSSYLELWVFYTL*KKAKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000013284 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000033933 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000006176 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000010098 | 2 retrocopies | |
Homo sapiens | ENSG00000102172 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000003123 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000000192 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000013185 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000020392 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000007897 | 1 retrocopy | |
Mus musculus | ENSMUSG00000071708 | 6 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009955 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006016 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000020182 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000007688 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000012109 | 3 retrocopies |