Parental gene: | HSPE1, ENSG00000115541 |
| Aliases: | HSPE1, CPN10, EPF, GROES, HSP10 |
| Description: | heat shock 10kDa protein 1 (chaperonin 10) [Source:HGNC Symbol;Acc:5269] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 2:198364717..198368181(+) |
>ENSG00000115541
ATGGCAGGACAAGCGTTTAGAAAGTTTCTTCCACTCTTTGACCGAGTATTGGTTGAAAGGAGTGCTGCTGAAACTGTAAC
CAAAGGAGGCATTATGCTTCCAGAAAAATCTCAAGGAAAAGTATTGCAAGCAACAGTAGTCGCTGTTGGATCGGGTTCTA
AAGGAAAGGGTGGAGAGATTCAACCAGTTAGCGTGAAAGTTGGAGATAAAGTTCTTCTCCCAGAATATGGAGGCACCAAA
GTAGTTCTAGATGACAAGGATTATTTCCTATTTAGAGATGGTGACATTCTTGGAAAGTACGTAGACTGA
ATGGCAGGACAAGCGTTTAGAAAGTTTCTTCCACTCTTTGACCGAGTATTGGTTGAAAGGAGTGCTGCTGAAACTGTAAC
CAAAGGAGGCATTATGCTTCCAGAAAAATCTCAAGGAAAAGTATTGCAAGCAACAGTAGTCGCTGTTGGATCGGGTTCTA
AAGGAAAGGGTGGAGAGATTCAACCAGTTAGCGTGAAAGTTGGAGATAAAGTTCTTCTCCCAGAATATGGAGGCACCAAA
GTAGTTCTAGATGACAAGGATTATTTCCTATTTAGAGATGGTGACATTCTTGGAAAGTACGTAGACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 89 .42 RPM |
| bodymap2_lung | 41 .81 RPM |
| bodymap2_breast | 45 .72 RPM |
| bodymap2_adipose | 21 .55 RPM |
| bodymap2_adrenal | 44 .48 RPM |
| bodymap2_skeletal_muscle | 12 .90 RPM |
| bodymap2_thyroid | 105 .98 RPM |
| bodymap2_prostate | 32 .84 RPM |
| bodymap2_colon | 87 .78 RPM |
| bodymap2_testis | 56 .35 RPM |
| bodymap2_brain | 61 .79 RPM |
| bodymap2_heart | 19 .22 RPM |
| bodymap2_white_blood_cells | 13 .53 RPM |
| bodymap2_lymph_node | 56 .39 RPM |
| bodymap2_ovary | 72 .73 RPM |
| bodymap2_kidney | 94 .55 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000004008 | ortholog_one2many | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000013246 | ortholog_one2one | 27 retrogenes |
retro_dnov_1088, retro_dnov_1117, retro_dnov_1214, retro_dnov_1375, retro_dnov_1391, retro_dnov_1405, retro_dnov_1412, retro_dnov_1428, retro_dnov_1445, retro_dnov_1546, retro_dnov_1647, retro_dnov_1652, retro_dnov_1686, retro_dnov_1821, retro_dnov_2176, retro_dnov_2291, retro_dnov_2413, retro_dnov_2569, retro_dnov_2625, retro_dnov_2652, retro_dnov_418, retro_dnov_481, retro_dnov_483, retro_dnov_490, retro_dnov_524, retro_dnov_554, retro_dnov_966,
|
| Procavia capensis | ENSPCAG00000009541 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000016078 | ortholog_one2one | 7 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_366 | 91.67 | 82.35 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_495 | 90.91 | 97.06 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_963 | 84.31 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_hsap_1066 | 70.83 | 92.16 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_hsap_1152 | 90.29 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_hsap_1351 | 93.14 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_hsap_1524 | 90.20 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_hsap_1646 | 95.15 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_hsap_1703 | 93.62 | 92.16 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_hsap_2248 | 65.71 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_hsap_2402 | 87.50 | 94.12 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_hsap_2480 | 76.09 | 89.22 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_hsap_2812 | 64.18 | 61.76 | Please wait, loading | Please wait, loading | Please wait, loading |
| 14. | retro_hsap_2813 | 73.20 | 92.16 | Please wait, loading | Please wait, loading | Please wait, loading |
| 15. | retro_hsap_3455 | 80.58 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 16. | retro_hsap_3540 | 58.00 | 96.08 | Please wait, loading | Please wait, loading | Please wait, loading |
| 17. | retro_hsap_3664 | 71.84 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 18. | retro_hsap_4194 | 75.28 | 86.27 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000115541 retrocopies