Parental gene:

HSPE1, ENSSSCG00000016078

Aliases:None
Description:heat shock 10kDa protein 1 (chaperonin 10) [Source:HGNC Symbol;Acc:5269]
Organism:Pig (Sus scrofa)
Coordinates:15:112548609..112550291(+)


>ENSSSCG00000016078
ATGGCAGGACAAGCATTTAGAAAGTTTCTTCCTCTCTTTGATCGAGTATTAGTTGAAAGAAGTGCAGCTGAAACGGTAAC
CAAAGGAGGCATTATGCTTCCAGAAAAATCTCAAGGAAAAGTATTGCAAGCAACCGTAGTAGCTGTTGGATCAGGCTCTA
AAGGAAAGGGTGGAGAGATTCAACCAGTTAGTGTCAAAGTTGGAGATAAAGTTCTTCTGCCAGAATATGGAGGCACCAGA
GTAGTTCTGGATGACAAGGATTATTTCTTATTTAGAGATGGTGACATTCTTGGAAAATACGTAGACTGA

Library Parental gene expression (RPM)
SRP014902_placenta 15 .13 RPM
SRP014902_testis 131 .26 RPM
SRP018856_adipose 93 .50 RPM
SRP018288_kidney 329 .99 RPM
SRP018288_lung 18 .94 RPM
SRP018288_liver 397 .54 RPM
SRP018288_heart 147 .37 RPM
SRP035408_liver 187 .41 RPM
SRP035408_brain 75 .65 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000004008 ortholog_one2many 1 retrogene
retro_cjac_254,
Dasypus novemcinctus ENSDNOG00000013246 ortholog_one2one 27 retrogenes
retro_dnov_1088, retro_dnov_1117, retro_dnov_1214, retro_dnov_1375, retro_dnov_1391, retro_dnov_1405, retro_dnov_1412, retro_dnov_1428, retro_dnov_1445, retro_dnov_1546, retro_dnov_1647, retro_dnov_1652, retro_dnov_1686, retro_dnov_1821, retro_dnov_2176, retro_dnov_2291, retro_dnov_2413, retro_dnov_2569, retro_dnov_2625, retro_dnov_2652, retro_dnov_418, retro_dnov_481, retro_dnov_483, retro_dnov_490, retro_dnov_524, retro_dnov_554, retro_dnov_966,
Homo sapiens ENSG00000115541 ortholog_one2one 18 retrogenes
retro_hsap_1066, retro_hsap_1152, retro_hsap_1351, retro_hsap_1524, retro_hsap_1646, retro_hsap_1703, retro_hsap_2248, retro_hsap_2402, retro_hsap_2480, retro_hsap_2812, retro_hsap_2813, retro_hsap_3455, retro_hsap_3540, retro_hsap_366, retro_hsap_3664, retro_hsap_4194, retro_hsap_495, retro_hsap_963,
Gorilla gorilla ENSGGOG00000027944 ortholog_one2many 17 retrogenes
retro_ggor_1051, retro_ggor_117, retro_ggor_1243, retro_ggor_1545, retro_ggor_157, retro_ggor_1676, retro_ggor_1821, retro_ggor_1956, retro_ggor_1957, retro_ggor_1958, retro_ggor_2331, retro_ggor_2391, retro_ggor_2476, retro_ggor_2492, retro_ggor_775, retro_ggor_841, retro_ggor_897,
Macaca mulatta ENSMMUG00000010491 ortholog_one2many 1 retrogene
retro_mmul_344,
Procavia capensis ENSPCAG00000009541 ortholog_one2one 1 retrogene
retro_pcap_330,
Pongo abelii ENSPPYG00000025876 ortholog_one2many 1 retrogene
retro_pabe_179,
Pan troglodytes ENSPTRG00000012774 ortholog_one2one 17 retrogenes
retro_ptro_1033, retro_ptro_1117, retro_ptro_1152, retro_ptro_1591, retro_ptro_1752, retro_ptro_1907, retro_ptro_1908, retro_ptro_2343, retro_ptro_2406, retro_ptro_2485, retro_ptro_2847, retro_ptro_287, retro_ptro_374, retro_ptro_667, retro_ptro_726, retro_ptro_786, retro_ptro_926,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_103 53.92 97.06
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2. retro_sscr_106 53.92 97.06
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3. retro_sscr_294 76.84 92.16
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4. retro_sscr_298 82.52 100.00
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5. retro_sscr_401 83.15 87.25
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6. retro_sscr_1059 85.44 100.00
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7. retro_sscr_1088 77.08 93.14
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Download FASTA sequences of all ENSSSCG00000016078 retrocopies