RetrogeneDB ID: | retro_sscr_106 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 1:50667822..50668120(+) | ||
Located in intron of: | ENSSSCG00000023510 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HSPE1 | ||
Ensembl ID: | ENSSSCG00000016078 | ||
Aliases: | None | ||
Description: | heat shock 10kDa protein 1 (chaperonin 10) [Source:HGNC Symbol;Acc:5269] |
Percent Identity: | 53.92 % |
Parental protein coverage: | 97.06 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | AGQAFRKFLPLFDRVLVERSAAETVTKG-GIMLPEKSQGKVLQATVVAVGSGSKGKGGEI-QPVSVKVGD |
.GQ.F.......DRV..ER..A.T.TK..GIM.PE.SQGKVL..T.VA...GSK..G.EI......K... | |
Retrocopy | SGQTFSYSPRHYDRVFIERRTAQTSTKE<GIMRPENSQGKVLHVT*VASELGSKREGEEIFNQLA*KLEI |
Parental | KVLLPEYGGTRVVLDDK-DYFLFRDGDILGKY |
.VLLPEY.G..VVLDDK...FLF..GDI.GKY | |
Retrocopy | NVLLPEYQGNTVVLDDK<GFFLF*AGDIHGKY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 15 .13 RPM |
SRP014902_testis | 0 .00 RPM | 131 .26 RPM |
SRP018288_heart | 0 .00 RPM | 147 .37 RPM |
SRP018288_kidney | 0 .00 RPM | 329 .99 RPM |
SRP018288_liver | 0 .00 RPM | 397 .54 RPM |
SRP018288_lung | 0 .00 RPM | 18 .94 RPM |
SRP018856_adipose | 0 .00 RPM | 93 .50 RPM |
SRP035408_brain | 0 .00 RPM | 75 .65 RPM |
SRP035408_liver | 0 .00 RPM | 187 .41 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3664 |
Pan troglodytes | retro_ptro_2485 |
Gorilla gorilla | retro_ggor_2476 |
Sus scrofa | retro_sscr_103 |