Parental gene: | RPL13A, ENSG00000142541 |
| Aliases: | RPL13A, L13A, TSTA1 |
| Description: | ribosomal protein L13a [Source:HGNC Symbol;Acc:10304] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 19:49990810..49995565(+) |
>ENSG00000142541
ATGGCGGAGGTGCAGGTCCTGGTGCTTGATGGTCGAGGCCATCTCCTGGGCCGCCTGGCGGCCATCGTGGCTAAACAGGT
ACTGCTGGGCCGGAAGGTGGTGGTCGTACGCTGTGAAGGCATCAACATTTCTGGCAATTTCTACAGAAACAAGTTGAAGT
ACCTGGCTTTCCTCCGCAAGCGGATGAACACCAACCCTTCCCGAGGCCCCTACCACTTCCGGGCCCCCAGCCGCATCTTC
TGGCGGACCGTGCGAGGTATGCTGCCCCACAAAACCAAGCGAGGCCAGGCCGCTCTGGACCGTCTCAAGGTGTTTGACGG
CATCCCACCGCCCTACGACAAGAAAAAGCGGATGGTGGTTCCTGCTGCCCTCAAGGTCGTGCGTCTGAAGCCTACAAGAA
AGTTTGCCTATCTGGGGCGCCTGGCTCACGAGGTTGGCTGGAAGTACCAGGCAGTGACAGCCACCCTGGAGGAGAAGAGG
AAAGAGAAAGCCAAGATCCACTACCGGAAGAAGAAACAGCTCATGAGGCTACGGAAACAGGCCGAGAAGAACGTGGAGAA
GAAAATTGACAAATACACAGAGGTCCTCAAGACCCACGGACTCCTGGTCTGA
ATGGCGGAGGTGCAGGTCCTGGTGCTTGATGGTCGAGGCCATCTCCTGGGCCGCCTGGCGGCCATCGTGGCTAAACAGGT
ACTGCTGGGCCGGAAGGTGGTGGTCGTACGCTGTGAAGGCATCAACATTTCTGGCAATTTCTACAGAAACAAGTTGAAGT
ACCTGGCTTTCCTCCGCAAGCGGATGAACACCAACCCTTCCCGAGGCCCCTACCACTTCCGGGCCCCCAGCCGCATCTTC
TGGCGGACCGTGCGAGGTATGCTGCCCCACAAAACCAAGCGAGGCCAGGCCGCTCTGGACCGTCTCAAGGTGTTTGACGG
CATCCCACCGCCCTACGACAAGAAAAAGCGGATGGTGGTTCCTGCTGCCCTCAAGGTCGTGCGTCTGAAGCCTACAAGAA
AGTTTGCCTATCTGGGGCGCCTGGCTCACGAGGTTGGCTGGAAGTACCAGGCAGTGACAGCCACCCTGGAGGAGAAGAGG
AAAGAGAAAGCCAAGATCCACTACCGGAAGAAGAAACAGCTCATGAGGCTACGGAAACAGGCCGAGAAGAACGTGGAGAA
GAAAATTGACAAATACACAGAGGTCCTCAAGACCCACGGACTCCTGGTCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 328 .33 RPM |
| bodymap2_lung | 1095 .62 RPM |
| bodymap2_breast | 689 .11 RPM |
| bodymap2_adipose | 967 .42 RPM |
| bodymap2_adrenal | 1518 .40 RPM |
| bodymap2_skeletal_muscle | 598 .29 RPM |
| bodymap2_thyroid | 674 .57 RPM |
| bodymap2_prostate | 1422 .20 RPM |
| bodymap2_colon | 1303 .66 RPM |
| bodymap2_testis | 649 .24 RPM |
| bodymap2_brain | 156 .35 RPM |
| bodymap2_heart | 269 .24 RPM |
| bodymap2_white_blood_cells | 1717 .29 RPM |
| bodymap2_lymph_node | 1494 .82 RPM |
| bodymap2_ovary | 1466 .56 RPM |
| bodymap2_kidney | 446 .76 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000005296 | possible_ortholog | 3 retrogenes | |
| Canis familiaris | ENSCAFG00000029892 | possible_ortholog | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000000072 | possible_ortholog | 16 retrogenes | |
| Echinops telfairi | ENSETEG00000017076 | possible_ortholog | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000016213 | ortholog_one2one | 3 retrogenes | |
| Mus musculus | ENSMUSG00000074129 | possible_ortholog | 3 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000010958 | ortholog_one2one | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000020618 | possible_ortholog | 10 retrogenes | |
| Sus scrofa | ENSSSCG00000003166 | possible_ortholog | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_293 | 73.33 | 87.19 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_298 | 85.29 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_397 | 76.92 | 95.07 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_hsap_436 | 68.14 | 53.33 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_hsap_615 | 99.51 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_hsap_671 | 69.46 | 98.03 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_hsap_730 | 91.63 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_hsap_753 | 84.56 | 67.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_hsap_967 | 93.10 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_hsap_1072 | 86.58 | 72.91 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_hsap_1100 | 95.07 | 99.51 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_hsap_1111 | 54.95 | 53.20 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_hsap_1268 | 97.54 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 14. | retro_hsap_1410 | 89.34 | 60.10 | Please wait, loading | Please wait, loading | Please wait, loading |
| 15. | retro_hsap_2200 | 70.69 | 84.73 | Please wait, loading | Please wait, loading | Please wait, loading |
| 16. | retro_hsap_2500 | 93.69 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 17. | retro_hsap_3173 | 82.64 | 59.11 | Please wait, loading | Please wait, loading | Please wait, loading |
| 18. | retro_hsap_3350 | 79.80 | 99.51 | Please wait, loading | Please wait, loading | Please wait, loading |
| 19. | retro_hsap_3444 | 72.94 | 82.27 | Please wait, loading | Please wait, loading | Please wait, loading |
| 20. | retro_hsap_3652 | 70.69 | 56.65 | Please wait, loading | Please wait, loading | Please wait, loading |
| 21. | retro_hsap_3752 | 77.59 | 54.76 | Please wait, loading | Please wait, loading | Please wait, loading |
| 22. | retro_hsap_3772 | 83.19 | 58.62 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000142541 retrocopies