Parental gene:

RPL13A, ENSSSCG00000003166

Aliases:None
Description:Sus scrofa ribosomal protein L13a (RPL13A), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001244068]
Organism:Pig (Sus scrofa)
Coordinates:6:50293761..50373937(+)


>ENSSSCG00000003166
ATGGCGGAGGGGCAGCAGGTGCTGGTGCTCGATGGCCGAGGCCATCTCCTGGGCCGCCTGGCGGCCATTGTGGCCAAGCA
GGTACTTCTGGGCCGGAAGGTGGTGGTTGTGCGCTGTGAGGGCATCAACATTTCTGGCAATTTTTACAGAAACAAACTGA
AGTACCTGGCCTTCCTCCGCAAGCGCATGAATACCAACCCGTCCCGAGGCCCCTACCACTTCCGAGCCCCCAGCCGCATC
TTCTGGCGGACGGTGCGAGGCATGCTGCCCCACAAGACCAAGCGAGGGCAGGCCGCCCTGGACCGTCTCAAGGTGTTCGA
TGGGATCCCGCCACCCTATGACAAGAAAAAGCGCATGGTGGTGCCTGCCGCCCTCAAGGTGGTGCGTCTGAAGCCTACGC
GGAAGTTCGCCTACCTGGGACGCCTGGCTCATGAGGTTGGCTGGAAGTACCAGGCAGTTACAGCCACCCTGGAGGAGAAG
AGGAAGGAGAAGGCCAAGATCCATTACCGCAAGAAGAAGCAGCTCATGAGGCTGCGGAAGCAGGCGGAAAAGAACGTAGA
GAAGAAGATCGACAGGTTCACGGAGGTCCTCAAGACCCATGGATTCCTAGTCTGA

Library Parental gene expression (RPM)
SRP014902_placenta 596 .49 RPM
SRP014902_testis 1096 .35 RPM
SRP018856_adipose 599 .82 RPM
SRP018288_kidney 375 .31 RPM
SRP018288_lung 443 .45 RPM
SRP018288_liver 253 .62 RPM
SRP018288_heart 331 .72 RPM
SRP035408_liver 1076 .01 RPM
SRP035408_brain 1828 .74 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014027 possible_ortholog 2 retrogenes
retro_amel_1332, retro_amel_1720,
Bos taurus ENSBTAG00000005296 ortholog_one2one 3 retrogenes
retro_btau_1251, retro_btau_719, retro_btau_789,
Canis familiaris ENSCAFG00000029892 possible_ortholog 3 retrogenes
retro_cfam_1772, retro_cfam_924, retro_cfam_976,
Callithrix jacchus ENSCJAG00000000072 possible_ortholog 16 retrogenes
retro_cjac_1130, retro_cjac_1706, retro_cjac_182, retro_cjac_197, retro_cjac_1997, retro_cjac_2170, retro_cjac_2322, retro_cjac_2467, retro_cjac_2468, retro_cjac_2665, retro_cjac_2699, retro_cjac_2755, retro_cjac_3009, retro_cjac_664, retro_cjac_941, retro_cjac_972,
Cavia porcellus ENSCPOG00000012417 ortholog_one2many 2 retrogenes
retro_cpor_1000, retro_cpor_888,
Equus caballus ENSECAG00000015832 possible_ortholog 3 retrogenes
retro_ecab_388, retro_ecab_653, retro_ecab_773,
Erinaceus europaeus ENSEEUG00000014071 ortholog_one2many 6 retrogenes
retro_eeur_168, retro_eeur_310, retro_eeur_315, retro_eeur_484, retro_eeur_562, retro_eeur_618,
Echinops telfairi ENSETEG00000017076 possible_ortholog 2 retrogenes
retro_etel_46, retro_etel_853,
Felis catus ENSFCAG00000009194 ortholog_one2many 4 retrogenes
retro_fcat_1197, retro_fcat_1649, retro_fcat_324, retro_fcat_548,
Homo sapiens ENSG00000142541 possible_ortholog 22 retrogenes
retro_hsap_1072, retro_hsap_1100, retro_hsap_1111, retro_hsap_1268, retro_hsap_1410, retro_hsap_2200, retro_hsap_2500, retro_hsap_293, retro_hsap_298, retro_hsap_3173, retro_hsap_3350, retro_hsap_3444, retro_hsap_3652, retro_hsap_3752, retro_hsap_3772, retro_hsap_397, retro_hsap_436, retro_hsap_615, retro_hsap_671, retro_hsap_730, retro_hsap_753, retro_hsap_967,
Gorilla gorilla ENSGGOG00000002932 possible_ortholog 11 retrogenes
retro_ggor_12, retro_ggor_1739, retro_ggor_214, retro_ggor_2271, retro_ggor_2737, retro_ggor_334, retro_ggor_6, retro_ggor_615, retro_ggor_627, retro_ggor_846, retro_ggor_869,
Loxodonta africana ENSLAFG00000016213 possible_ortholog 3 retrogenes
retro_lafr_1160, retro_lafr_576, retro_lafr_810,
Microcebus murinus ENSMICG00000009318 possible_ortholog 6 retrogenes
retro_mmur_240, retro_mmur_283, retro_mmur_311, retro_mmur_359, retro_mmur_65, retro_mmur_736,
Myotis lucifugus ENSMLUG00000004945 ortholog_one2many 10 retrogenes
retro_mluc_1015, retro_mluc_1342, retro_mluc_1836, retro_mluc_1894, retro_mluc_2219, retro_mluc_2221, retro_mluc_2427, retro_mluc_2471, retro_mluc_2506, retro_mluc_675,
Macaca mulatta ENSMMUG00000007551 possible_ortholog 14 retrogenes
retro_mmul_1100, retro_mmul_1256, retro_mmul_1638, retro_mmul_1756, retro_mmul_2179, retro_mmul_2249, retro_mmul_2352, retro_mmul_2399, retro_mmul_296, retro_mmul_500, retro_mmul_520, retro_mmul_547, retro_mmul_837, retro_mmul_924,
Mustela putorius furo ENSMPUG00000002604 possible_ortholog 3 retrogenes
retro_mputfur_1418, retro_mputfur_853, retro_mputfur_935,
Mus musculus ENSMUSG00000074129 ortholog_many2many 3 retrogenes
retro_mmus_1129, retro_mmus_1334, retro_mmus_20,
Nomascus leucogenys ENSNLEG00000005211 possible_ortholog 23 retrogenes
retro_nleu_1173, retro_nleu_1429, retro_nleu_1568, retro_nleu_159, retro_nleu_1823, retro_nleu_1873, retro_nleu_1892, retro_nleu_1897, retro_nleu_2047, retro_nleu_228, retro_nleu_2398, retro_nleu_2415, retro_nleu_2463, retro_nleu_2614, retro_nleu_2789, retro_nleu_2928, retro_nleu_330, retro_nleu_392, retro_nleu_441, retro_nleu_475, retro_nleu_513, retro_nleu_744, retro_nleu_760,
Oryctolagus cuniculus ENSOCUG00000025258 possible_ortholog 9 retrogenes
retro_ocun_1038, retro_ocun_1077, retro_ocun_1392, retro_ocun_1462, retro_ocun_304, retro_ocun_674, retro_ocun_756, retro_ocun_786, retro_ocun_972,
Otolemur garnettii ENSOGAG00000004625 possible_ortholog 7 retrogenes
retro_ogar_1496, retro_ogar_211, retro_ogar_2254, retro_ogar_3148, retro_ogar_54, retro_ogar_596, retro_ogar_612,
Ochotona princeps ENSOPRG00000001194 ortholog_one2many 3 retrogenes
retro_opri_316, retro_opri_764, retro_opri_806,
Procavia capensis ENSPCAG00000004086 possible_ortholog 4 retrogenes
retro_pcap_163, retro_pcap_290, retro_pcap_415, retro_pcap_416,
Pongo abelii ENSPPYG00000010251 possible_ortholog 1 retrogene
retro_pabe_148,
Pan troglodytes ENSPTRG00000011298 possible_ortholog 1 retrogene
retro_ptro_31,
Pteropus vampyrus ENSPVAG00000010958 possible_ortholog 3 retrogenes
retro_pvam_129, retro_pvam_625, retro_pvam_771,
Rattus norvegicus ENSRNOG00000020618 ortholog_many2many 10 retrogenes
retro_rnor_1073, retro_rnor_1112, retro_rnor_1212, retro_rnor_1292, retro_rnor_1357, retro_rnor_1742, retro_rnor_564, retro_rnor_593, retro_rnor_665, retro_rnor_988,
Tupaia belangeri ENSTBEG00000016579 possible_ortholog 3 retrogenes
retro_tbel_2417, retro_tbel_4071, retro_tbel_958,
Tarsius syrichta ENSTSYG00000008791 ortholog_one2many 4 retrogenes
retro_tsyr_1363, retro_tsyr_437, retro_tsyr_620, retro_tsyr_920,
Tursiops truncatus ENSTTRG00000005485 ortholog_one2one 7 retrogenes
retro_ttru_1304, retro_ttru_1736, retro_ttru_629, retro_ttru_735, retro_ttru_833, retro_ttru_971, retro_ttru_995,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_290 68.39 84.80
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_sscr_300 68.39 84.80
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_sscr_392 73.82 93.63
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_sscr_743 71.35 92.65
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSSSCG00000003166 retrocopies