RetrogeneDB ID: | retro_rnor_593 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:95838012..95838448(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl13a | ||
Ensembl ID: | ENSRNOG00000020618 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L13a [Source:RefSeq peptide;Acc:NP_775462] |
Percent Identity: | 73.97 % |
Parental protein coverage: | 69.95 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDK-KKRMVVPAALKVVRLK |
...N..R..YHF.APS.IFW.TV.GMLPHKTKR..AALE.LKVLDGI.PP....KK.MVVPAALKVVRLK | |
Retrocopy | ISRNFYRNRYHFQAPSCIFWCTVQGMLPHKTKRDRAALECLKVLDGILPPIMT>KKQMVVPAALKVVRLK |
Parental | PTRKFAYLGRLAHE---VGWKYQAVTATLEEKRKEKAKIHYRKKKQLLRLRKQAEKNVEKKICKFTEVLK |
PTRKFAYL..L..E...VG..YQ.VTAT.EEK.KEKAKIHY.KKKQLLRL.KQA.KNVEKKIC.FTEVLK | |
Retrocopy | PTRKFAYLRQLTLEVGGVGRGYQTVTATPEEKQKEKAKIHYWKKKQLLRLQKQA*KNVEKKICNFTEVLK |
Parental | TNGLLV |
T.GL.V | |
Retrocopy | TTGLMV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 134 .95 RPM |
SRP017611_kidney | 0 .00 RPM | 155 .20 RPM |
SRP017611_liver | 0 .00 RPM | 89 .29 RPM |