RetrogeneDB ID: | retro_mmus_20 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 19:50030123..50030735(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000062083 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl13a | ||
Ensembl ID: | ENSMUSG00000074129 | ||
Aliases: | Rpl13a, 1810026N22Rik, Tstap198-7, tum-antigen | ||
Description: | ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455] |
Percent Identity: | 92.61 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAEGQVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGP |
MAEGQVLVLDGR.HLLGRLAAIVAK.VLLGRKVVVV..EGINISGNFYRNKLKYLAFL.KRM.TNPSRGP | |
Retrocopy | MAEGQVLVLDGRDHLLGRLAAIVAKPVLLGRKVVVVCFEGINISGNFYRNKLKYLAFLQKRMDTNPSRGP |
Parental | YHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGR |
YHFRAPSRIFW.TVRGMLPHKTKRGQAALERL.VLDGIPP.YDKKK.MVVPAALKVVRLKPTRKFAYLGR | |
Retrocopy | YHFRAPSRIFWHTVRGMLPHKTKRGQAALERLEVLDGIPPLYDKKKQMVVPAALKVVRLKPTRKFAYLGR |
Parental | LAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQILRLRKQAEKNVEKKICKFTEVLKTNGLLV |
LAHEVGWKYQAVTATLEEK.KEKAK.HY.KKKQILRL.KQAEKNVEKKICKFTEVL.TNGLLV | |
Retrocopy | LAHEVGWKYQAVTATLEEKQKEKAKVHYQKKKQILRLWKQAEKNVEKKICKFTEVLNTNGLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .07 RPM | 173 .82 RPM |
SRP007412_cerebellum | 0 .04 RPM | 165 .87 RPM |
SRP007412_heart | 0 .09 RPM | 193 .19 RPM |
SRP007412_kidney | 0 .10 RPM | 234 .92 RPM |
SRP007412_liver | 0 .05 RPM | 237 .86 RPM |
SRP007412_testis | 0 .00 RPM | 139 .37 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_65988 | 383 libraries | 482 libraries | 185 libraries | 11 libraries | 11 libraries |